Agla013602.1
Basic Information
- Insect
- Anoplophora glabripennis
- Gene Symbol
- -
- Assembly
- GCA_000390285.2
- Location
- NW:6865-16651[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 0.00061 0.019 15.1 0.3 1 23 168 190 168 190 0.96 2 20 0.0055 0.17 12.1 0.9 2 23 197 218 197 218 0.98 3 20 5.5e-07 1.7e-05 24.7 1.3 1 23 224 246 224 246 0.98 4 20 0.0051 0.16 12.2 0.1 1 23 252 274 252 274 0.96 5 20 3.7e-06 0.00011 22.1 0.5 2 23 281 302 280 302 0.97 6 20 1.5e-05 0.00046 20.2 4.9 1 23 308 330 308 330 0.98 7 20 9e-06 0.00027 20.9 5.7 1 23 336 358 336 358 0.98 8 20 6.5e-05 0.002 18.2 3.1 1 23 364 386 364 386 0.98 9 20 0.00061 0.019 15.1 0.3 1 23 566 588 566 588 0.96 10 20 0.0055 0.17 12.1 0.9 2 23 595 616 595 616 0.98 11 20 5.5e-07 1.7e-05 24.7 1.3 1 23 622 644 622 644 0.98 12 20 0.0051 0.16 12.2 0.1 1 23 650 672 650 672 0.96 13 20 3.7e-06 0.00011 22.1 0.5 2 23 679 700 678 700 0.97 14 20 1.5e-05 0.00046 20.2 4.9 1 23 706 728 706 728 0.98 15 20 9e-06 0.00027 20.9 5.7 1 23 734 756 734 756 0.98 16 20 6.5e-05 0.002 18.2 3.1 1 23 762 784 762 784 0.98 17 20 2.2e-07 6.8e-06 26.0 0.3 1 23 790 812 790 812 0.99 18 20 6.4e-05 0.002 18.2 7.9 1 23 818 840 818 840 0.98 19 20 1.3e-05 0.00039 20.4 0.6 1 23 846 868 846 868 0.97 20 20 1.8e-05 0.00054 20.0 0.6 1 23 874 896 874 896 0.98
Sequence Information
- Coding Sequence
- atggaaattgaaaaaaatgatgATCCAAGTATAAACCCGgtttcattaattaaatatgaTAAAACATGTAGAGCTTGTTTAAATGAAAACGATAATATGGTATCAATTTACCATCCTGACATTAAAAACATGTTCACTTATTGTACTTCCTTAGAAATAAACAACGATGACAAATTACCGAGTTTAATCTGTACACAGTGCAAAGCAGAATTATTAAGAgcccataattttaaaaacttatgtATCAAGTCACATAACATTTTACTGGAATACCTTTCACGTTATAAGTTAGATGATATTGAAATAaacttaaatgatttattacGAACCGATCTCTGTGATccaaacataaatattaattatgatCTTCCAAGAGAAGACAAAAATGTTATAGATATAGTTGACAAACAAATCAAAGAGATATTAGAAGAACATATTAATAATTGTGATGATGATGACCTTAACATCGAAGATACCAGCCAACTTTTGAAAGACAATATTTACAAATGTAGTATTTGTTCAGAAACTTTTAAATTAGAAGCAGATCTCCAAACACATAAAATAGGTCATCCCAGCGATGGTGTGCCGAAATGTACACTTTGTAATAAGCTATTTAATGATGCCAAAATTTTAAGAAGGCACGTCAGAATACATTTACAGCTGAAACCATTTCCTTGCACTATGTGTAACAAAAGTTTCTCAGaatcggGGAGCTTAACCCGTCACTTAAGAAAACACAGAGGTGAAAAGAGACACATTTGTTCAGCGTGTGGAAAAGGCTTCTATGAAGCCAATGTATTGGCAATTCACATGCGTATTCACACAGGTGAAAAACCGATAACTTGCGACATCTGTAGCAAAAAATTCTCAGATCCTAATGGATTGAGAAGTCACATGAAGTCACACACAGgtgaaaaaaatcatgtttgCAACATTTGTAACAAGTCTTTCTCACATTCGTTTGTTCTAAAGAAACATTTGAGGGTGCATACTGGTGAGAGGCCATTTGTTTGTCATACTTGCGGCAAGACTTTCACACagAGTCACTACGTGAAAATACATATGAGGCAGCATACTGGAGAATTACCATACATGTGCATGATTTGCCATAAAGGTTTCACTCAACATAGCCAAATGGAGATCCATCTTAGAATTCACACAGGAATAAAGCCATATGTATGTCAGaagagtaatatggaaattgaaaaaaatgatgATCCAAGTATAAACCCGgtttcattaattaaatatgaTAAAACATGTAGAGCTTGTTTAAATGAAAACGATAATATGGTATCAATTTACCATCCTGACATTAAAAACATGTTCACTTATTGTACTTCCTTAGAAATAAACAACGATGACAAATTACCGAGTTTAATCTGTACACAGTGCAAAGCAGAATTATTAAGAgcccataattttaaaaacttatgtATCAAGTCACATAACATTTTACTGGAATACCTTTCACGTTATAAGTTAGATGATATTGAAATAaacttaaatgatttattacGAACCGATCTCTGTGATccaaacataaatattaattatgatCTTCCAAGAGAAGACAAAAATGTTATAGATATAGTTGACAAACAAATCAAAGAGATATTAGAAGAACATATTAATAATTGTGATGATGATGACCTTAACATCGAAGATACCAGCCAACTTTTGAAAGACAATATTTACAAATGTAGTATTTGTTCAGAAACTTTTAAATTAGAAGCAGATCTCCAAACACATAAAATAGGTCATCCCAGCGATGGTGTGCCGAAATGTACACTTTGTAATAAGTTATTTAATGATGCCAAAATATTAAGAAGGCACGTCAGAATACATTTACAGCTGAAACCATTTCCTTGCACTATGTGTAACAAAAGTTTCTCAGaatcggGGAGCTTAACCCGTCACTTAAGAAAACACAGAGGTGAAAAGAGACACATTTGTTCAGCGTGTGGAAAAGGCTTCTATGAAGCCAATGTATTGGCAATTCACATGCGTATTCACACAGGTGAAAAACCGATAACTTGCGACATCTGTAGCAAAAAATTCTCAGATCCTAATGGATTGAGAAGTCACATGAAGTCACACACAGgtgaaaaaaatcatgtttgCAACATTTGTAACAAGTCTTTCTCACATTCGTTTGTTCTAAAGAAACATTTGAGGGTGCATACTGGTGAGAGGCCATTTGTTTGTCATACTTGCGGCAAGACTTTCACACagAGTCACTACGTGAAAATACATATGAGGCAGCATACTGGAGAATTACCATACATGTGCATGATTTGCCATAAAGGTTTCACTCAACATAGCCAAATGGAGATCCATCTTAGAATTCACACAGGAATAAAGCCATATGTATGTCAGgtTTGTGGGAAGACTTTTGCGAGATCTGGCGATCTTAGCACTCACCTGAGGTCTCACACAGGAGAAAAACCATTCTCCTGCAGCCATTGTCATAAGCAGTACGCTACATCGAGCCATCTAAAAGTCCACTTGAGGTCGCATACTGGAGAACGTAATCACATGTGCGTTTACTGTGGGAAAAGGTTTGTTGAAAGTCAGGGTCTGAAAGCTCATATACGTGTACATACCGGCGAAAAGCCCTATGTTTGTAATATTTGTGGTCATAGATTTGCTCAGTCAGGGGCTTTAGCGACACACAAGAAAAGTCATATAGTTAGAAAGAATGGAAATGTCATTCAAGAAGAGACATAa
- Protein Sequence
- MEIEKNDDPSINPVSLIKYDKTCRACLNENDNMVSIYHPDIKNMFTYCTSLEINNDDKLPSLICTQCKAELLRAHNFKNLCIKSHNILLEYLSRYKLDDIEINLNDLLRTDLCDPNININYDLPREDKNVIDIVDKQIKEILEEHINNCDDDDLNIEDTSQLLKDNIYKCSICSETFKLEADLQTHKIGHPSDGVPKCTLCNKLFNDAKILRRHVRIHLQLKPFPCTMCNKSFSESGSLTRHLRKHRGEKRHICSACGKGFYEANVLAIHMRIHTGEKPITCDICSKKFSDPNGLRSHMKSHTGEKNHVCNICNKSFSHSFVLKKHLRVHTGERPFVCHTCGKTFTQSHYVKIHMRQHTGELPYMCMICHKGFTQHSQMEIHLRIHTGIKPYVCQKSNMEIEKNDDPSINPVSLIKYDKTCRACLNENDNMVSIYHPDIKNMFTYCTSLEINNDDKLPSLICTQCKAELLRAHNFKNLCIKSHNILLEYLSRYKLDDIEINLNDLLRTDLCDPNININYDLPREDKNVIDIVDKQIKEILEEHINNCDDDDLNIEDTSQLLKDNIYKCSICSETFKLEADLQTHKIGHPSDGVPKCTLCNKLFNDAKILRRHVRIHLQLKPFPCTMCNKSFSESGSLTRHLRKHRGEKRHICSACGKGFYEANVLAIHMRIHTGEKPITCDICSKKFSDPNGLRSHMKSHTGEKNHVCNICNKSFSHSFVLKKHLRVHTGERPFVCHTCGKTFTQSHYVKIHMRQHTGELPYMCMICHKGFTQHSQMEIHLRIHTGIKPYVCQVCGKTFARSGDLSTHLRSHTGEKPFSCSHCHKQYATSSHLKVHLRSHTGERNHMCVYCGKRFVESQGLKAHIRVHTGEKPYVCNICGHRFAQSGALATHKKSHIVRKNGNVIQEET
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -