Agla013989.1
Basic Information
- Insect
- Anoplophora glabripennis
- Gene Symbol
- -
- Assembly
- GCA_000390285.2
- Location
- NW:41138-42757[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 6.8e-12 3.8e-09 35.8 0.3 1 42 15 56 15 58 0.92 2 2 4 2.2e+03 -1.8 0.1 13 23 134 145 132 146 0.72
Sequence Information
- Coding Sequence
- ATGGGCAGAGTATATGTGAGAAAAACGACAAGAGCATCTTGGACCGAAGCTGCAATGTCAACAGCCATGGAAAAAGTGAAAAGTGGTCAGATGGGGATAAATGCAGCCAGTAGGGAGTATGGTATACCTTCAAGAACTTTGAGGAGATATCTAGCTACGAATAGCTCTACAATGTACTTAGGTAGAAGTCCAGCTCTAAGTAGAGAACACGAAAAAAGGTTGGTCCGGCATATACAGGCACTGGGAGAAGTGGGGTTCGCACCGAGTAGAAATGATGTGAAAAAAATGGCTTTTGCTTTCGCCAAAAAGTTAAGCATAAACTGTTTCTCTGAAAATGATGAGTCAGCAGGGAAAGTTTGGTTAAATGGATTCTTAAGAGGAAATCCCAGCTTATCTATCAGAAAATCTGAAGGCCTCTCACTAGCTCGGGCCCAAGGGATGAATAGGATAGAAGTTGGTGATTATTTTGATCTCTTGCATAAACTATTAATTGACAATGACTTATTAGATAAGCCGTCCAAAATATTCCATATGGACGAAACAGGCATTCAAGTGAACAATAAGGCAGAGCGTGTTGTTGCTACGAAAGGGAGTAAAGATGTCTATTCTCTCACAAGTGCAGAAAAGGGTGAAAATATCTCATTAATAGCATGCTGCAATGCTGAAGGGACATTTTTTCCGCCAGTCCTAATAATGAaatgtaaatacagaaaacCAGATTTTTTAGATGGACTTCCTCCTGGCTCCGATGTTTATATGAACCAAAAGACCTCGTACATTAACAgcgatttatttataaagtggTTCCGTGAATACTTCATTCCAAGAAAAGGTACCGGCAACGCGTTACTGATATTGGATGGTCATGCATCACATTGCAATGCGGTTGAACTTTTGGACTTGGCTTCTGAAAACAACATTGAACTTTTATGTCTGTCCAGCCATACAACGCAGGCATTGCAGCCTCTcgacaaatctttttttaaaccGCTCAAAAGCTATTTTGCGCAAGAGGCAAGAACATGGATGATTAATCACAAAGACAGAAAGTTGAACAGGCACAACGTTTCTGCACTGATAGGAAAGGCTTGGGTTAAATCAGTTTCCGTTAGTAATGCAGTATCCGGATTCAAGGCAACAGGTATTCATCCATATGACCCATCTGTTATCcccgaacatttttttaatatctctgaTGCTGCATGTGCCAACGTACAGGTACCAAATCAAGAAGTTCTTCCTGAAGGAGTTGCCGCTGCCGAAATCCCCAATGATCTTGCAACAGATCCTCAGCAAGAAATATCCTGTGATTCTGCAGCAAATTCTCAGCCGGAACCGAAAGAATCTCCATCTAAAGAAGTTGTTCCCGAAGAAGTTGCCGCTGCTGAAATCCCCAATGATCCTGCAACAGATCCTCAGCAAGACTCAAAAGAAACTCCATCCAAACTTTTAAGGGAAATTGCTTCCGTGCCAACTATTCCAATTAATACCTCAAAAAGGAAGCAGTCAGCTATTATCCTAACATCTCCAGAAAATAGAGCCAAACGACAGATTCTGTCTGATAAAAAGTCAGCTAAACATTGCCCAAATGTTCCAGTGCTCCTAGCACATCCGGAGTAA
- Protein Sequence
- MGRVYVRKTTRASWTEAAMSTAMEKVKSGQMGINAASREYGIPSRTLRRYLATNSSTMYLGRSPALSREHEKRLVRHIQALGEVGFAPSRNDVKKMAFAFAKKLSINCFSENDESAGKVWLNGFLRGNPSLSIRKSEGLSLARAQGMNRIEVGDYFDLLHKLLIDNDLLDKPSKIFHMDETGIQVNNKAERVVATKGSKDVYSLTSAEKGENISLIACCNAEGTFFPPVLIMKCKYRKPDFLDGLPPGSDVYMNQKTSYINSDLFIKWFREYFIPRKGTGNALLILDGHASHCNAVELLDLASENNIELLCLSSHTTQALQPLDKSFFKPLKSYFAQEARTWMINHKDRKLNRHNVSALIGKAWVKSVSVSNAVSGFKATGIHPYDPSVIPEHFFNISDAACANVQVPNQEVLPEGVAAAEIPNDLATDPQQEISCDSAANSQPEPKESPSKEVVPEEVAAAEIPNDPATDPQQDSKETPSKLLREIASVPTIPINTSKRKQSAIILTSPENRAKRQILSDKKSAKHCPNVPVLLAHPE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00066773;
- 90% Identity
- iTF_00066117;
- 80% Identity
- -