Agra026978.2
Basic Information
- Insect
- Anoplolepis gracilipes
- Gene Symbol
- -
- Assembly
- GCA_031304115.1
- Location
- JAPWJP010002008.1:4629442-4632844[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.00014 0.025 16.3 2.7 1 23 5 28 5 28 0.98 2 10 4.9e-05 0.0089 17.7 1.0 1 23 34 56 34 56 0.96 3 10 2.9e-05 0.0053 18.4 3.1 1 23 62 84 62 84 0.96 4 10 9.2e-07 0.00017 23.1 0.3 1 23 90 112 90 112 0.97 5 10 7e-06 0.0013 20.4 2.5 1 23 710 732 710 732 0.96 6 10 0.00032 0.058 15.1 1.1 1 23 739 762 739 762 0.93 7 10 2.5e-05 0.0046 18.6 0.1 1 23 770 793 770 793 0.97 8 10 0.00015 0.027 16.2 4.5 1 23 799 821 799 821 0.98 9 10 1.4e-05 0.0025 19.4 7.9 1 23 827 849 827 849 0.99 10 10 1.3e-06 0.00024 22.6 1.1 1 23 855 877 855 877 0.98
Sequence Information
- Coding Sequence
- ATGCTGAAAATTTTCAAGTGTTTTCAATGTAACTCGGTCTTTGATCGTCCTTCGCAATTGAATTATCATTATCGAAGTAAACATCTGGGAGAAAAGTCTCACATATGCCAAATATGTGAGAAAGGATTTTTTCGTAAAGCAGACTTGCGTATGCACTTGAATATTCATTTAGGtacgaatttttatatttgcgaaGTCTGTGGAAAAAAGTTCAATCACATATCGAATCTTATAAGACACTGTAGAATACATACagGAATTAAGCCATACGCATGTCCAATTTGTGATAAGCGTTTCACACAAATTTCTTCGCTAGCAAAGCACAAACAAATACATACACCAAAGGACTTTACACAGCAGTATTGTAATACTAGTCTTATCAACAATAAATCACAAGCTAAGAATACATTGAATAACGACAAgACAATAAGTGATgacataaaagataaaagtcaAAAGATACTTTGTACAGAACAAAAATGTGTCAGCCAGAATACTGCTAGAGATATACAACATAATGAgataattttcgaatataataCTGATATGAGTAACAAAACTTGTTTATCCTTGGGAACTGTTCATGTTGGATCTAGTAAGCCGGACCATTTTTCTGAGATTGAAGAAAGACTTAAATCTATTAACTTATCCACGAATAAAACTGTTGTTTCAAATTCTGCTCAAGATAGAACGTATAATGAACAGATACAATCCAAAGACATAGGCTATCAATTatctaaaaacaattttacttttctatcTCGAGATAGAGAACCAAATGCTGACTCAGACATTcataatgatgaaaatattttgagattgaATGACTCAAACACATATACAATCCAAGAAACTTGTAAAGAGACTTCCACAAATGATATAAAGAATTCATCAAATGTGGAAACAAATTTGCAAATCTGTAATTTTAGTGAAGtttcaacaaataaaaaatttttacctaAACAAATAtgcaaagaaattattattgaaaatagaaaaggcaataaattattaaatgatgaTAATCAATTGTACTTGGGATTTTCTGACTCGGGAatgttgaaattaaatgaatcaCGATATTGCCATAACACAGATTTTGCCAATGTTAATGTTAATCATACAATGAAATCCCAACATTCTGAGAGTATTATTGCTAATGATGCATTATACACTCTTGTTGCTAACGaggatcaaaataatttattacagcaCAATGAGACtttcaataattcaaataatatagcgTTAAATAATGAAGAGCCAATGTTGCGTTTAGTACAGACAGAAACTGGTgaacaattttatgaatatgtaataaataatttaacagaaaaacaaaatgtttcaTGTGGAAAGAATTTGGAGAATGCAACAGAGGAAGCTGCAAACGCTTTTGGagattgtgaaaaaataaattcaaatttgaaagaaagtaATAGGAAAAGTGATCACATACAACATCAACAAAGTTTGGACgctcttaatataaataacgaatTTAACTATACGCAGCTTGAATCTCAAGGAGGGGAGAAGAATTTCTCTGTTCTATGTCATGGCGAACATTTCCAACAAAATTTACAACAAGCTTACAATTTTGAGAATTTGGAATTATTGGAGTCGCATACGGATTTTGACAAATATGTTGAAACAGGCTTTGAAGCATTTGAAAGACTGAATTACGAAAATTGTGAGAGATTTTTAGAATTGGAAGTTTCCGATATCGGTGTAGAATGTTCAACGTATAAAGAACCTTCGATGATACGTTTAATTCAAAATGATGGTGAACAGCTATTGGAACTGTTACAGGATTCTCAAATTATcgaagaaaatcaaaatttcatacaagctaatattaacaaagattgtTTAAACGTTTTGGaagatagtaataaaataacagattGTTCCAAAAGTAAATCAgacttttttacatatgtcgaaaataatattccattagaagaaaatattagtaGTAATCAAGCCatggaaaataaagaaaagtattCGGACAATAGCACACAGCATTTGTATAAAGACACAATTACCAATGAAAGTGTAAGTAAAGAGAATTGTGTCAAGACATCAGAAGAAccgaaaaaactgaaaatcaccttgaaaaattttcattgttcCGTTTGCAATAAAACATTCTCGACAGCGTACAATTACAAGCAGCATATCGGCATACATTTTACGGATCAGCAAAAATTTCACTGTAAGGATTGTGGAATATCGTTTGCATGGAAATCTACTCTGAACAAGCATATTGTGAACAATCATAGCTTGGATGGGCCGCAAAAGTTCGTTTGTGACATTTGTCCAAAAGTCTACAGCACTTTGTCACAAGTAAATGAACATGTGAAAAGGGATCATTTGAAACAGCGCGATCATGTTTGCCAGACCTGCGGCAAGACTTTCTTCAAGAGATTTGACTTGAAGATTCACAGTAGAACACACACGAATGAACGTCCGTACGTGTGTAACGTTTGTAGCAAAAGGTTTCACCATCAGAGCCATTTTATTCGTCACATGCGCATACATTTGGATATTAAACCATATGCTTGCGTGTATTGTCCAAAGAAATTCACGCAACTCAGCTCGTTGAAGGTGCACCAGCAGAAGCATCAGGTTCCTATGGATTTCACGGATTATCAGATCGACGAGGACGATCCCATTGGTACCGGCGACATTATGAAATAA
- Protein Sequence
- MLKIFKCFQCNSVFDRPSQLNYHYRSKHLGEKSHICQICEKGFFRKADLRMHLNIHLGTNFYICEVCGKKFNHISNLIRHCRIHTGIKPYACPICDKRFTQISSLAKHKQIHTPKDFTQQYCNTSLINNKSQAKNTLNNDKTISDDIKDKSQKILCTEQKCVSQNTARDIQHNEIIFEYNTDMSNKTCLSLGTVHVGSSKPDHFSEIEERLKSINLSTNKTVVSNSAQDRTYNEQIQSKDIGYQLSKNNFTFLSRDREPNADSDIHNDENILRLNDSNTYTIQETCKETSTNDIKNSSNVETNLQICNFSEVSTNKKFLPKQICKEIIIENRKGNKLLNDDNQLYLGFSDSGMLKLNESRYCHNTDFANVNVNHTMKSQHSESIIANDALYTLVANEDQNNLLQHNETFNNSNNIALNNEEPMLRLVQTETGEQFYEYVINNLTEKQNVSCGKNLENATEEAANAFGDCEKINSNLKESNRKSDHIQHQQSLDALNINNEFNYTQLESQGGEKNFSVLCHGEHFQQNLQQAYNFENLELLESHTDFDKYVETGFEAFERLNYENCERFLELEVSDIGVECSTYKEPSMIRLIQNDGEQLLELLQDSQIIEENQNFIQANINKDCLNVLEDSNKITDCSKSKSDFFTYVENNIPLEENISSNQAMENKEKYSDNSTQHLYKDTITNESVSKENCVKTSEEPKKLKITLKNFHCSVCNKTFSTAYNYKQHIGIHFTDQQKFHCKDCGISFAWKSTLNKHIVNNHSLDGPQKFVCDICPKVYSTLSQVNEHVKRDHLKQRDHVCQTCGKTFFKRFDLKIHSRTHTNERPYVCNVCSKRFHHQSHFIRHMRIHLDIKPYACVYCPKKFTQLSSLKVHQQKHQVPMDFTDYQIDEDDPIGTGDIMK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00730957;
- 90% Identity
- -
- 80% Identity
- -