Agra000258.1
Basic Information
- Insect
- Anoplolepis gracilipes
- Gene Symbol
- -
- Assembly
- GCA_031304115.1
- Location
- JAPWJP010000043.1:1162300-1164078[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 3.9e-05 0.0071 18.0 1.1 1 23 75 97 75 97 0.98 2 13 0.0004 0.072 14.8 1.1 1 23 140 163 140 163 0.98 3 13 0.0052 0.95 11.3 1.2 2 23 174 195 173 195 0.96 4 13 0.0034 0.61 11.9 1.8 1 23 203 226 203 226 0.95 5 13 0.01 1.9 10.4 4.9 2 23 311 332 311 332 0.98 6 13 9.6e-05 0.018 16.8 2.0 1 23 341 364 341 364 0.97 7 13 0.02 3.7 9.5 2.0 1 23 378 401 378 401 0.95 8 13 1.3e-06 0.00024 22.6 1.2 1 23 407 430 407 430 0.96 9 13 0.014 2.5 10.0 0.8 3 23 437 458 435 458 0.94 10 13 0.00098 0.18 13.6 0.4 1 23 463 486 463 486 0.97 11 13 2e-08 3.5e-06 28.4 0.4 2 23 493 514 492 514 0.97 12 13 1.7e-06 0.0003 22.3 0.8 1 23 520 542 520 542 0.98 13 13 4.1e-07 7.4e-05 24.2 0.1 1 23 548 570 548 570 0.98
Sequence Information
- Coding Sequence
- ATGAGACTATGGCAGTATGTCGGTACCGGTGGTAAATTACGGTATTCATTGATACCAATGTTAGATAACACTGATAAAACTAAGAAAGGCATAAGTGTACTTGATGTATCGTCATTGACCTCCATTAAAGTCGAACAGACTGAGGATCAATCGAACAATCTAAAAACTAATGTCAACAGTTGCATGGATTCTTCAATACATTTGCACGAGATAGCCAATGATTATATCTGCAACAAATGCGACATGAAATTCCCCTTGCGATCTATGCTGAATCGTCATAAGATAACGCACAATATGCCTTCATGGTTTCGCAAGAGATGTTTGGTAGAGAAGCATGCGCAACGTCTAAAAATTAGGACTCGTGGACGATGCAGCGGAAAATTAAAAGCGCGAGGGAAGCGTTCAGAGGAAGCAAAGTACGTTTGCACGTTTTGCAATTTGAGTTACAATAGACTAACGACTTTGGACGCACACATAAAGAGAAAGCACGGGAAAGACACGACGAATCCGAAGAAACTCGTTTGTACGATCTGCGATTACGAGTGTTTGAGCGAGATGAATCTAAACAGGCATATGTCTAAGCACAGAAGCAAAAGTACGACGAGTTTTGCTTGTAACGTGTGTAACTTTGAATGTAAAAGAAGCACTACTCTAGCGTCTCACTTGGCACGAAATCATAAGAGATCTAAGAAAAATCCGGACACATCTGTCACAAGGAGACGTAGAATAACAAAGTGTAACTACGCGTCTTCTGATAAATCTTTCTCGCGAAACAGTCGCGAAACAACCAAGAAGGCAGCGTTAATCCCATACGAAGACTCAGACCCCAATTTGACGATTAAAAAGGAGGAAAATTGCGTCGAAGATTGCAACGAAGAAGAGACAATCGCTGAAATCTCGAAGAAATCCAGTCAGAATAATATTGGCGAACGTTGCGATCTCTGCGATTTCACGTGCGCGAAAAAGAGCACGTTGTACTCGCATAAACGTCGGCACAAGCTGGAGGACGTCGGCGAGGTATACGCGTGCAATGAATGCGGCTTCAAGACCAGCAAGAAGTCATCGTTATACTCTCACATAAAGCGGAAACACAAGGAGTCTCGAGGTGCCTGCGACGCGCAGCCGGAACTCTTCTATTGCAGTCAGtgcgattataaaaataagaacaaaTACGAGCTAAAGATACACGTCGCGCGCAAACACTCGGACGATTTCAAATTCTCCTGCGAGACCTGCGGCAAGAAGTTCAAGGTCAAAGGCGATCTGACGAACCACATACGTTTCAGCCACCGGGAGCAGCCTGTGATCTGCGACGTTTGCGGCAAGACCTGCCTCAATAGCAACTCCCTATACGTTCATCAGAAGTTCGCGCATTACAAGGCCAAGTACGAGTGTCAGATATGCAAGAGGCGAATGGTCAGCCAGGAGAACCTCGACGAGCACATGCTCAGGCAGCACGAACGCAGAGAGAATGTAGTGTGCGAGGAGTGCGGCAAGACGTTCTCGCGGAACAGTAGATTGAAGGTACACATGAGGATTCACACCGGGGACAAACCGTACAGCTGCACCGTCTGTACCAAGTCCTTTGCTCGCAGGACCGCTCTCAAACAGCATCTGCTCATTCACACCGGCATTAGGCCGTACGTGTGCGATATCTGCGGTAAAGCCTTCACGCAGAAACCAGGCCTGATCAGCCACAGAAAATCGCATCCTGGCTCTCATCCACCACTGCCTCGTGTCCTCATCGACCATATCTTGAATGACGTCATGAACGCTTGA
- Protein Sequence
- MRLWQYVGTGGKLRYSLIPMLDNTDKTKKGISVLDVSSLTSIKVEQTEDQSNNLKTNVNSCMDSSIHLHEIANDYICNKCDMKFPLRSMLNRHKITHNMPSWFRKRCLVEKHAQRLKIRTRGRCSGKLKARGKRSEEAKYVCTFCNLSYNRLTTLDAHIKRKHGKDTTNPKKLVCTICDYECLSEMNLNRHMSKHRSKSTTSFACNVCNFECKRSTTLASHLARNHKRSKKNPDTSVTRRRRITKCNYASSDKSFSRNSRETTKKAALIPYEDSDPNLTIKKEENCVEDCNEEETIAEISKKSSQNNIGERCDLCDFTCAKKSTLYSHKRRHKLEDVGEVYACNECGFKTSKKSSLYSHIKRKHKESRGACDAQPELFYCSQCDYKNKNKYELKIHVARKHSDDFKFSCETCGKKFKVKGDLTNHIRFSHREQPVICDVCGKTCLNSNSLYVHQKFAHYKAKYECQICKRRMVSQENLDEHMLRQHERRENVVCEECGKTFSRNSRLKVHMRIHTGDKPYSCTVCTKSFARRTALKQHLLIHTGIRPYVCDICGKAFTQKPGLISHRKSHPGSHPPLPRVLIDHILNDVMNA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00729517;
- 90% Identity
- -
- 80% Identity
- -