Agra010311.1
Basic Information
- Insect
- Anoplolepis gracilipes
- Gene Symbol
- -
- Assembly
- GCA_031304115.1
- Location
- JAPWJP010000994.1:2162278-2165427[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.0013 0.23 13.3 0.4 2 23 339 360 338 360 0.97 2 13 4.7e-06 0.00084 20.9 2.6 1 23 366 388 366 388 0.96 3 13 7.1e-05 0.013 17.2 3.4 1 23 397 419 397 419 0.97 4 13 2.6e-05 0.0047 18.6 1.5 1 23 425 447 425 447 0.98 5 13 2.9e-06 0.00053 21.6 1.5 1 23 452 474 452 474 0.98 6 13 0.0036 0.66 11.8 4.0 1 23 480 502 480 502 0.99 7 13 6.4e-06 0.0012 20.5 0.6 2 23 522 543 521 543 0.97 8 13 4.5e-05 0.0082 17.8 0.7 1 23 549 572 549 572 0.97 9 13 0.0038 0.69 11.8 3.1 1 23 578 600 578 600 0.97 10 13 0.0005 0.091 14.5 3.4 1 23 606 628 606 628 0.98 11 13 3.7e-06 0.00068 21.2 3.4 1 23 634 656 634 656 0.98 12 13 1.1e-06 0.00021 22.8 0.9 1 23 662 684 662 684 0.98 13 13 0.0025 0.46 12.3 0.4 2 23 690 712 689 712 0.92
Sequence Information
- Coding Sequence
- ATGAGAATTATTTGCGCtgcattaaattgtaaatattcctCGGAAAACGAAGATTCGTCAAAtgtcatttttgttaaatttcctAACAATGACAGagcCAAAGTATGGGCAGAATGTTGCGGTAGATCGGATTTAGCTACAAAATCGAATGcagaattacatttaaattattacatttgctCCCATCACATTGAAGATCGTTACATAAGCAAAACTGTGCCTATTATTATAGAAGAAGGTACTATTCCTACCTTATTTAGAACCAACTCAAATACTGATAATGAggattcaataaatatatttgataaatcacAGCATCTCCAAGAGGTAGATGATAATATGCCTCTAACATATTGCGATATGAATGTTGAGATAGATGAATATCAAGATATCACTATCAGATTTACCAATTTATGCCGAATCTGTGGTGAATCTGCTTTGGATGGGATAGATATTTTTGCAGCCAAGGGTATAgaacttaaattaaaagaaaaaattaatttgcttatGCCTATTTCAATTGGTGTAGAAGACTCGATGCCACACAGATTATGCATTGATTGTTGTAACAAATTAGAAATTGCACATTCACTAGTTGTTTTGTGTTTACGAACTGATATACGAATGAAAAGattcttaaatattgaaagacagTCAGAGTATAAGAATAAGTACAATGCATTACTTGATGAATGTTCATTAGAGATGGCTCAAGAGATGTGTGCAAATGATACTACGCAACCTTATTCATTTGTtacaaataagataataaatcctACAGAAACAAGTTTGAGAGAATTAGGAAATGGTGTGTGTTCTGAAATAcagaatcataattttaagagCATTGCAAAAAGCATTATACCATCAGAGCTAAGTACTCTGATTCAAACCTGTACAGAAGTTAACAGCAAAGCTAATGAAACTATCACAGAAGAAATATCACAAATTCAACAAGATAAAAATCAGGATGAAAATCAcagtattttatgtcaaactTTGTGTGATACACAGAAAtGTTTTACATGTGATAAGATGTACGAAAAATGGTCGAGCTTGGACATTCATGAAGCTACTCACAGAATAGATAAACCATATCTTTGCGATCTGTGTGGAAAAAGTTTTAAGCATTCTAATAATTTGAGAGGTCATAAAAGAATTCATTTGGATGAATCTATAAAGAAAAGACACATGTGTGAGGTCTGTGGCAATGCATTCAGATCACGatttcatTTGCGAGAACATATGAATCAACATGATGGCAACAGAGCTTATTCTTGTGAACAGTGTGGGAAAGCCTTCTACAAAAGGATTCAATTACGACAACACAAATTATCACACGGATCTAATAAGCATGTATGTTCGATTTGTGGAGCGACATTTAATCGCAGAGGAAACATGAATATGCACATGAAACGACATGATGTGATTGAAGCATATACATGTAGTGTCTGTGCCTACAAGTGCAAATCTATGAGCGAATTGAAAATACATAGGAAAAAACATACAGAGGAAGAAATAGTAGATAGCatcaaaaagaaatgtaatgaCAAGGAAATATGGCGGTGTAATGTCTGCAACAAAGTATTCTCAAAGCGCACTCTTTTGATAAATCACGAACGCATACACGAAGACGATAAATCGTACGAATGCGACGAATGCGGTAAGAAATTAGCGAGTAAAAGCTCGTTGCTGTATCATAAGAAATCTATGCATCTGAAAGAGAGACCGCACATGTGTCATTATTGTGGAAATTCATTTGTTTCGAAAGAGACGCGATTAATTCACGAAAGAATACACACCGGAGAACGTCCGTATGTTTGCAAGGTGTGTAATATGCGATATAGATGTTCCAGTAATCTCAGCCAACATATGAAGATCCACACAGGTCTTAAACCGCACAAGTGTCATTATTGTAACAAAGGTTTTACACGTAAAGGTGCGCTACTTGTCCACGAGAGAATCCATACGGGCGTTAAACCATATCCTTGCGAGACTTGTGGTAGAAGTTTTTCGCAAAAGAATGATATGTTGAAGCATGTCAAGACGCATAATGGCAAATTAATACAGTGTAGTCAGTGCAACGAGATCTTTCAACGGAAAAAAGATATGTTAAAACATATCGCAGATACGCATAAACGAGATATTTCGGTAACTTCAAACTATGTCAGTTCGCCGTCACACATTCCTCGAGCCAATACAACTTCTGCCAATACAACTACCTCTTcggatagagagaaagaaattgaataa
- Protein Sequence
- MRIICAALNCKYSSENEDSSNVIFVKFPNNDRAKVWAECCGRSDLATKSNAELHLNYYICSHHIEDRYISKTVPIIIEEGTIPTLFRTNSNTDNEDSINIFDKSQHLQEVDDNMPLTYCDMNVEIDEYQDITIRFTNLCRICGESALDGIDIFAAKGIELKLKEKINLLMPISIGVEDSMPHRLCIDCCNKLEIAHSLVVLCLRTDIRMKRFLNIERQSEYKNKYNALLDECSLEMAQEMCANDTTQPYSFVTNKIINPTETSLRELGNGVCSEIQNHNFKSIAKSIIPSELSTLIQTCTEVNSKANETITEEISQIQQDKNQDENHSILCQTLCDTQKCFTCDKMYEKWSSLDIHEATHRIDKPYLCDLCGKSFKHSNNLRGHKRIHLDESIKKRHMCEVCGNAFRSRFHLREHMNQHDGNRAYSCEQCGKAFYKRIQLRQHKLSHGSNKHVCSICGATFNRRGNMNMHMKRHDVIEAYTCSVCAYKCKSMSELKIHRKKHTEEEIVDSIKKKCNDKEIWRCNVCNKVFSKRTLLINHERIHEDDKSYECDECGKKLASKSSLLYHKKSMHLKERPHMCHYCGNSFVSKETRLIHERIHTGERPYVCKVCNMRYRCSSNLSQHMKIHTGLKPHKCHYCNKGFTRKGALLVHERIHTGVKPYPCETCGRSFSQKNDMLKHVKTHNGKLIQCSQCNEIFQRKKDMLKHIADTHKRDISVTSNYVSSPSHIPRANTTSANTTTSSDREKEIE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00109885;
- 90% Identity
- iTF_00109885;
- 80% Identity
- iTF_00109885;