Agra019300.2
Basic Information
- Insect
- Anoplolepis gracilipes
- Gene Symbol
- -
- Assembly
- GCA_031304115.1
- Location
- JAPWJP010001515.1:2445211-2446375[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 7.1e-14 2.4e-10 41.2 0.1 3 39 123 158 121 171 0.88
Sequence Information
- Coding Sequence
- ATGAAATGTactttgaaaatgtttatgtTCATCGCATGCTGTTTAGATGTAATTGTTTTAAGTTCACTTTGGGAGGACTATCCGATACTCGGCACGAGCACGGCCAGCAGACCTAACAGTTATGCCGAGCGCAAGTTTAGATATAAACATATGGATCACATCGCGGGTAGGTACAAGTGCTCCAAGTGTGCCAAGTCGTATCGATGGAAGCATCATCTCGTGGAGCACGTCAAGGCCTCATGCGGCCAGAAGAAGGCAGAGTGTTGTCCGTATTGCAGTTATAAGAGCAATCAATCATTTGCTTACGAGACCTGTTTACGAAGCACGAGGTATACAATGAAGTCGCGGAGATCTAAACGCGATTCGGAACAGGTGACGAGAGCCATCGAAGCCGTCGCCGGTGGAATGTCTTTAAGGAAGGCTGCGAAGATGTATTCCATATCCAAATCCGTTCTACATCGATACAGCAAGCATGGCATTCCGATGCGAATATTTAACGCGATGCATTACGAGACATATGCGAATTTTTAA
- Protein Sequence
- MKCTLKMFMFIACCLDVIVLSSLWEDYPILGTSTASRPNSYAERKFRYKHMDHIAGRYKCSKCAKSYRWKHHLVEHVKASCGQKKAECCPYCSYKSNQSFAYETCLRSTRYTMKSRRSKRDSEQVTRAIEAVAGGMSLRKAAKMYSISKSVLHRYSKHGIPMRIFNAMHYETYANF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -