Agra024499.1
Basic Information
- Insect
- Anoplolepis gracilipes
- Gene Symbol
- ttk_1
- Assembly
- GCA_031304115.1
- Location
- JAPWJP010001793.1:1016274-1018319[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 5.3e-17 1.8e-13 51.2 0.1 1 45 376 420 376 420 0.96
Sequence Information
- Coding Sequence
- atgtcgGACGTCACGCCATCCGAAGCATATCACCTCCGCTGGAACAATTATCAATGGAATCTGATCAGCGTGTTCGAGAACCTGCTCCAAACCGAGGCGTTCACCGACGTGACCCTCGTCGTGTACGACGAGGAGAATCACGTGACTCGCGATGAGGAATCATCGCGTATGCGGTTCATCAAGTGCCACAAGATCGTTTTAGCGGCGTGCTCAACCTACTTCCAGAGTCTGTTCATCAATCTGCCAAGTAACTCAGAGCCGCTAATCGTTctcaacaatattaaatatacgtatCTAAAGATACTACTGGAGTTCATGTATCGCGGCGAGGTGGACGTACATCGTGAACAGCTGAAACCTTTACTTGAAACCGCGAACACGCTGGCGGTCAAGGGTCTAAtgcacgaaaataaaaaactgtacTCGGCGTATAACGATTTTCAACAACAGGAAGATACGTTGGAGGCACCGTCGTCGCCACCACCGGCCATCAGCACCAGCACCAATGCCAGTAGCATGGCGGCGCACAGCAGCAGTCACGTGTCACCGCCGCATTCTACCTACGGTAGTCTTTACGCCAAGTCCTTGGGAACGACCTCGGAAATCAATCCAATTCAAAATCCTCTCTTTTGGCCGCTGACCACTCTACCGTTGCATGGAGTTTCCACAAGTCACCAATTATCGCCGCATTCCTCCCCAGTCGTTTCGATTCCCAGTGGTAGTGCCGGAGGAGGTAGTTCCTCTTACGACATCGGCTTCGAGACTTCGCCACTCAAGCGCATGAAGAAGGTGCTACATTCAAGCTTGCTGACGAATCGCGACACCCCGATACTGCGCACCGTGCTCGGCCAGGGCCATGCTGACAGCTCCGTCACCGGTATACCGTTGTTGCAGCCCGACAATCACGAATCGGCACACTTTCGCACTAACAGCAACGACTCTGTAAACGACAACGATAATCGTCGCAACACTGATTTGGGTTATGATGAAATGGCCCACAGCTCTTATACCGATCCTTCTATGGATGAGGATGAGAAGCAGCCATCACCGCAGTCACACACCGGAGATAACAAGTCGAGTAATACGACTCAGGCGAAACCTGAATGGAAACGATACAAACAATACACCCGAGATGACATTCAGGCAGCGATCCAAGCAGTGAGGTCAGGCATGAGCGCTGTAAAGGCTGCACGCCGATACGGTGTACCGTCTCGCACGCTCTATGATAAGGTGAAGAAGCTCGGCATCCCGACGTCGCGGCCGTTCAAGCGTTCAGTGAACGGCGGTAGCACGGCCTGTTTCCCGTACGGCATTGGTGGTAACGTAAACGGCAGAATTTACAGCAATAGCATACTATCTGAAAACGAGAACGAGGCCAGCAACAACATCAACATTGAAAACTTGGCTAGTAGCACGTCGAGCACTAGTGCTACCTACATCAAGCCGGCATCGAAGGATGTGTCGCAGGATCGAGACTCCATGTCCGATTCGATCACACGCTACAGTCCAAGTCCGGTCATATGCTGCGTCAAACAAAAGCAACCACCGCAAAACGTAGACGATGAAGTGGAAGATCTGTCGGTGAGTCGTAAATCCGATGGTCCAGGAACAATGACATCGGAAGCGGTCAAAGACCCTGAACCTCAGGAGAGTGGGTCACAGAATAGTGATTATTGCGATTACAGttaa
- Protein Sequence
- MSDVTPSEAYHLRWNNYQWNLISVFENLLQTEAFTDVTLVVYDEENHVTRDEESSRMRFIKCHKIVLAACSTYFQSLFINLPSNSEPLIVLNNIKYTYLKILLEFMYRGEVDVHREQLKPLLETANTLAVKGLMHENKKLYSAYNDFQQQEDTLEAPSSPPPAISTSTNASSMAAHSSSHVSPPHSTYGSLYAKSLGTTSEINPIQNPLFWPLTTLPLHGVSTSHQLSPHSSPVVSIPSGSAGGGSSSYDIGFETSPLKRMKKVLHSSLLTNRDTPILRTVLGQGHADSSVTGIPLLQPDNHESAHFRTNSNDSVNDNDNRRNTDLGYDEMAHSSYTDPSMDEDEKQPSPQSHTGDNKSSNTTQAKPEWKRYKQYTRDDIQAAIQAVRSGMSAVKAARRYGVPSRTLYDKVKKLGIPTSRPFKRSVNGGSTACFPYGIGGNVNGRIYSNSILSENENEASNNINIENLASSTSSTSATYIKPASKDVSQDRDSMSDSITRYSPSPVICCVKQKQPPQNVDDEVEDLSVSRKSDGPGTMTSEAVKDPEPQESGSQNSDYCDYS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00109941;
- 90% Identity
- iTF_00109941;
- 80% Identity
- iTF_00109941;