Aste004411.1
Basic Information
- Insect
- Anopheles stephensi
- Gene Symbol
- Gzf1
- Assembly
- GCA_013141755.1
- Location
- CM023249.1:76500608-76502877[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 2.8 1.6e+02 2.8 1.8 2 17 18 33 17 34 0.91 2 13 0.0041 0.23 11.8 0.1 1 21 237 257 237 258 0.96 3 13 0.00014 0.0083 16.3 2.2 1 23 265 288 265 288 0.94 4 13 0.037 2.1 8.7 0.2 2 19 374 391 373 393 0.84 5 13 0.0094 0.54 10.6 0.4 1 20 402 421 402 423 0.95 6 13 2.6 1.5e+02 2.9 2.7 3 23 464 487 461 487 0.86 7 13 0.047 2.7 8.4 0.5 2 20 510 528 509 530 0.92 8 13 0.001 0.06 13.6 0.4 2 23 538 560 537 560 0.96 9 13 5.8e-07 3.4e-05 23.8 0.6 1 23 567 589 567 589 0.97 10 13 0.044 2.5 8.5 0.1 1 23 595 620 595 620 0.96 11 13 1.3e-06 7.5e-05 22.8 1.4 1 23 626 648 626 648 0.98 12 13 0.96 55 4.3 2.0 1 23 654 679 654 679 0.92 13 13 1.8 1.1e+02 3.4 0.4 1 23 685 708 685 708 0.93
Sequence Information
- Coding Sequence
- ATGTCTGCAACAAAACGCGAATCAACGGATCCATCCACGGAAAATGTAATGCAGTGTCGTGTGTGTAGCAAAACTGTTTGCTCCCAGAAAGCTTTATGTATCTTCTCGCTGCTGGATGGAAGCAACGAGAAGGATGCGGTTAAAACTATCGCAGACATGATAGGAGAATTCGCCGATGTTACGATCAATCCGGACGATGATCGTTCGAAATTCATCTGTAGCATTTGCCTGGAAGCGGTCGAGAAAGCAGCCGAGCTGCGGCACCAGATCCGCACCAGCGAGCGAGTGGTACCAACGATATTACAGTCGCTGCAGATCGACAGTATTACCGAGCAGGACTACCGTTGCGAGTATTTGGAAGAATTTAAAGAGGAGATCGAAGCAATATCCCTACACAAGCCGGCGAATCACACGGAGGACGACGAATCCTCCCAGCCAGAAGAGCACACCAAGCACCAACAAAACCTGCAACTACCTTCTGATGATGAAATGGATCTGCTGCAGGATGGCATTCCGGAGCAGGACAAGCACCCGTTCGTGATGCCATCGCCCGACCTGATCGGCATTCGGTTAGAGTTTGAACATTTTGAATATTTAGAAATCCGGGGCGAACGGTGCTGTGGCTGCGAGCACATCGCAACCTGCCGCGATACGCTAATGGCACACGCGAAGGAAAAACATTCCCAAAAGTATTACGCCGACAGTAGCTACACGTGTCCTACGTGCTATGGAAAGTTTGCCACCGCAGAGGCACTGGAAACGCACCAGCAGTACTATCTGTACAGTGATGTGTTCCTGTGCACCGTTTGCCGGGAAGCATTTAACTTTCAGACACATCTGAAGCGCCATCTAAGGGAAGTGCATCAGGTACGGCAGCAAGAAGGAAGTGAGCAAAAGCGGAAGCCACCAGCAAAGAGTCACGACCTAAACCTGCCACTCACAGCACTGCCGGACGCGAGGTTTATTAAAGAAACGCGTGACTATCCTCAGTACCAGGTGTACTGCGTGTCGGGTGAACGGTGCTGTGCTTGTGGCATTCATCTAACGAACCTCGAACCGCACGCCGCCGAGCACCACATCGATACGGTGGACATTCTGGGAACGGACACGGATGAGCTGAAATGCAGCATCTGTAGGCGAACCTTTACATCCCGGCAGGAGCAGCTACTGCACGAGGAAGGCCGcttaaatttgaaacaaatttaCCAATGCAAACTGTGCCAGATGCTTTTCGAACGGAAACTGCAGCTGATTAAACATTTTCAGGCGGCGAGTAAAACGCAATGTCACGGATTGGTGGAAAACGAGGCGCAGAGTACTACAGCCAACGTAAAAGAAGGTGAACCGGGGGCGGAACTGGTTCCCGCCAGCAAGATCGATTacttctgctgttgctttaCACGCTGCAAGGAAGAGTACACCAGCGAGCAGGAACTGCTCGACCATGCCGCCACGGTTCACGGCGGAAGACGCAAGGAAAATGAGCACAAGCTTTGGGCACAGGGAGCGAAACGCAGCGAAACCCTCATCTGTCCCGTCTGTCGCCGGTGCTTCGAGAGCGAGGAAAAGGTTGCGAAGCATCGAACGTACAAACTAACACTGCCGAAGCAAACCTGCCGTCAGTGTGGACAGATTTTCATGAAAGCGTCCGGGCTCCGGGAGCATCAGCTGCGGGAGCATCTGAGCCTGAAGCTACAGTTTGCTTGCGAGGTATGTGGCAAACAGTTTGTTACGCGTTCTACGCTGAACAAACATCGGCAGGTGCACGAACCGTTCCAAAACTATCCCTGCTCGGTTGCTGGCTGCGAGGCGCTGTTTCGCAACGAGCAGCTGATGCAGCGACACTACCGGAACGTGCACATGGAGCTCAAGGCGTACGAATGCGGCCACTGTGGGAAGATGTTCCGTACGAAGGAATCGCTCGATATACACGAGCGGTCGCATACGGGGGAAAAGCCGTTTGCCTGTCGGCATGCGGGATGCAGCAAGCGATACGCTCACGGATCGGACCGGTTGCGGCACGAGCGGTCGGCACACACGGGCGAGAAGCCGCACGCGTGCCCGGTGTGTATGGCGGGATTTCTGCGCAAGCGGGAAATGCGATTGCACATGGAAAAGGTGCATTAG
- Protein Sequence
- MSATKRESTDPSTENVMQCRVCSKTVCSQKALCIFSLLDGSNEKDAVKTIADMIGEFADVTINPDDDRSKFICSICLEAVEKAAELRHQIRTSERVVPTILQSLQIDSITEQDYRCEYLEEFKEEIEAISLHKPANHTEDDESSQPEEHTKHQQNLQLPSDDEMDLLQDGIPEQDKHPFVMPSPDLIGIRLEFEHFEYLEIRGERCCGCEHIATCRDTLMAHAKEKHSQKYYADSSYTCPTCYGKFATAEALETHQQYYLYSDVFLCTVCREAFNFQTHLKRHLREVHQVRQQEGSEQKRKPPAKSHDLNLPLTALPDARFIKETRDYPQYQVYCVSGERCCACGIHLTNLEPHAAEHHIDTVDILGTDTDELKCSICRRTFTSRQEQLLHEEGRLNLKQIYQCKLCQMLFERKLQLIKHFQAASKTQCHGLVENEAQSTTANVKEGEPGAELVPASKIDYFCCCFTRCKEEYTSEQELLDHAATVHGGRRKENEHKLWAQGAKRSETLICPVCRRCFESEEKVAKHRTYKLTLPKQTCRQCGQIFMKASGLREHQLREHLSLKLQFACEVCGKQFVTRSTLNKHRQVHEPFQNYPCSVAGCEALFRNEQLMQRHYRNVHMELKAYECGHCGKMFRTKESLDIHERSHTGEKPFACRHAGCSKRYAHGSDRLRHERSAHTGEKPHACPVCMAGFLRKREMRLHMEKVH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -