Aste005151.1
Basic Information
- Insect
- Anopheles stephensi
- Gene Symbol
- su(Hw)
- Assembly
- GCA_013141755.1
- Location
- CM023249.1:2126823-2130608[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 3 1.7e+02 2.7 0.1 3 23 241 264 239 264 0.75 2 12 1.6e-05 0.00092 19.3 0.4 2 23 272 293 271 293 0.96 3 12 3.7 2.1e+02 2.5 0.6 12 23 349 361 346 361 0.83 4 12 0.0038 0.22 11.8 0.7 2 23 369 390 368 390 0.98 5 12 0.083 4.8 7.6 0.1 9 23 484 499 482 499 0.90 6 12 0.0023 0.13 12.5 0.9 2 23 507 528 506 528 0.96 7 12 1.5e-05 0.00087 19.4 0.3 1 23 559 582 559 582 0.96 8 12 0.0043 0.25 11.7 0.5 3 23 589 609 587 609 0.95 9 12 2e-06 0.00011 22.2 0.9 1 23 616 638 616 638 0.94 10 12 0.0091 0.52 10.7 0.1 3 23 655 676 653 676 0.96 11 12 4.4e-05 0.0025 17.9 2.1 2 20 683 701 683 703 0.94 12 12 7e-05 0.0041 17.3 4.6 3 23 712 732 710 732 0.97
Sequence Information
- Coding Sequence
- ATGGATGCAGCCGTagcaccaccgccgccgccgccagcagcaccactaccaccaccagcaccaccgaaCGATGTTTACGATGTCATCAATCAAAAGGAATGCGGAATATGTCTCACGTTCCGGACGGAGCAGATCTGCTTCGACATGTTCATGCCCCGGGAGGACGACCTGAAGGAGATACCGTATCTGGTGTGGAAGCATGTCGGGCTCCAGTTCCCACAGGAGACGGGAAAGCACTACGTCTGTCGGGACTGCGGGAATGCGGTGTACGAGTTCAATCGGTTCTACCTGATGGTGCAGAACGTACACCAGGAGCGGCAGGCGGCGGCGTTACAACAGGTCAAGCCAGAACAGAGCGAGCCGACAGTGGCGGAGGAAGCGGTCCAGAGCATCAGTCATCAGCAGAATGGGCATCATGGCGAGATGAAGCTGGatgcagcaccaccaccactgcagGTAGATGGGACCGGCGGTGGTAGTGGGCTGCCGGTACAGGACGTTCCGGAGTGCGGTGTGAAGCCCGAAACGAACGGAATGCCGGGACGGGGCAATGGGGCGGTCGACGGTGCGGTGGAACCGATGCAAGGGATGGCTTCGTACGTGGCGCTGAACGACACGGAGCCGGAAAGTAGTCGAATTCGGCCCCCGGTCGGCACACCGAGCCGGAAGCGCAAGAACCAAGAGATGGACGAGGAGATTATCGACTTCTACAAGCTCGTGTGTGACGTGTGCGAGGAGCGCGTAGAGTACGGCACGATGAAGGAGCTGAACCAGCACATGAAGCAGATGCACGGCGAGGAGTCGGGCCGGGTGAGCTGTCCGCAGTGTGGCAAAATGTTCCGGACGCGGGTGAAGCTGCTCGAGCACAAGAATGTACACCTGCGCCAGGACACGACATCGGAGGACGACGCGGAGAAACTGCAGTCCGAGCAGATGGACAAAGAGATTTTGGAATTTTACAAGCGCATCAGCTGCGAACTGTGCGATTCCAGCGCAaccggtgctggtgctggtcaACAGTCTGCCAGCAGCACGCTGTACGCGACCGTCAAGGAGCTGAACCATCACATGCGGCTGGTGCACGGACAGCAGGCCGGTACGGTGAAGTGTCCGCTGTGTGAGAAGAAAATCCGCACGCGGCCGAAACTGCTCGAACACAAGCGCTCGCACCAAACGCCAAACGTGCTGCTGGAGGAGGATTCCGGCAAATCGGGCAATGCCGGCGGTGAACCCGGTCCCGAGCTGACGGAAGAACAGAAGCAGACGCTAGATAGAGAAATATTCGATTTCTACAAACCAATTATATGCGAGATTTGTGAACCGGAGCGAGCGGCAACCGGCCAAGGGGAAACGGGTCCCGCTGCCGGTGGCCAGGGCGAGCCGGGAATGGTAGTGGcgatggcggcggcggcgacggcggcggtggcgacGGCGGCCACGACCGAGGAAGAGTACCGATCGCTCAAGCAACTGAACCAGCACATGCGGACGGTGCATGGACTCGAATCGGGCACGATCAAGTGTCAGCTGTGTGCGAAAAAGTTTCGATCGCGCGTCAAGTTGATCGAGCATAAGGAGATGCACCAGAATCCGGAACGGTTCCGGTGCGGCGTGTGTCAGGAGGTGCACCAAAACCTAGAGGAACACATTCAGAACAAGCACCAGGAGTGGGAGTTTGCGTGCGAAGAGTGTGGCAAGCGGTTTCCCTTCAAGAACCGGCTGACCGCCCACATGGCGAAGGTTCACATGAAGAAGGACATTATCTGTGAGGAATGTAACAAACCATTTACCAAGTTTAGCATcgagaaacacaaaaaaacggtccACGGTGGTGGCGGCGAGATGTTCCTGTGCAAAAACTGCCCCAAAACGTTCAAGACGCGCGTTTCGCTCGAGCGACACATGGAGGGCCACAATAACGGAGGTGAGCAGCAGCCGGTGGGTTCGGCCGCTACCGTAATCTGCGCGATTTGCAACTCGGTGCTGAAGGGCATGTACAACCTGAAGGCACACATGAAGCGCGTGCACGTCGAACAAACGCCGGCCACTTGCAGTACGTGCGGCAAAACGTTCAAATCGAAGCACAGTCTCAATACGCACACCGCGAACGTGTGCACCACGCGACAGTTTGGCTGCACGCACTGTGGCAAGCAGTTCAAGAAGCGGACAAAGCTGAAACAACACATGACGATTCATGCGCGCGGCGCCGACTAA
- Protein Sequence
- MDAAVAPPPPPPAAPLPPPAPPNDVYDVINQKECGICLTFRTEQICFDMFMPREDDLKEIPYLVWKHVGLQFPQETGKHYVCRDCGNAVYEFNRFYLMVQNVHQERQAAALQQVKPEQSEPTVAEEAVQSISHQQNGHHGEMKLDAAPPPLQVDGTGGGSGLPVQDVPECGVKPETNGMPGRGNGAVDGAVEPMQGMASYVALNDTEPESSRIRPPVGTPSRKRKNQEMDEEIIDFYKLVCDVCEERVEYGTMKELNQHMKQMHGEESGRVSCPQCGKMFRTRVKLLEHKNVHLRQDTTSEDDAEKLQSEQMDKEILEFYKRISCELCDSSATGAGAGQQSASSTLYATVKELNHHMRLVHGQQAGTVKCPLCEKKIRTRPKLLEHKRSHQTPNVLLEEDSGKSGNAGGEPGPELTEEQKQTLDREIFDFYKPIICEICEPERAATGQGETGPAAGGQGEPGMVVAMAAAATAAVATAATTEEEYRSLKQLNQHMRTVHGLESGTIKCQLCAKKFRSRVKLIEHKEMHQNPERFRCGVCQEVHQNLEEHIQNKHQEWEFACEECGKRFPFKNRLTAHMAKVHMKKDIICEECNKPFTKFSIEKHKKTVHGGGGEMFLCKNCPKTFKTRVSLERHMEGHNNGGEQQPVGSAATVICAICNSVLKGMYNLKAHMKRVHVEQTPATCSTCGKTFKSKHSLNTHTANVCTTRQFGCTHCGKQFKKRTKLKQHMTIHARGAD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00101878;
- 90% Identity
- -
- 80% Identity
- -