Asin001434.1
Basic Information
- Insect
- Anopheles sinensis
- Gene Symbol
- -
- Assembly
- GCA_000441895.2
- Location
- KE524975.1:540206-542932[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.012 0.84 10.0 0.2 1 21 237 257 237 258 0.95 2 11 0.00011 0.0075 16.5 0.4 1 23 265 288 265 288 0.96 3 11 0.0082 0.58 10.5 0.9 2 19 376 393 375 395 0.94 4 11 0.025 1.8 9.0 0.5 1 21 404 424 404 425 0.95 5 11 0.76 54 4.3 0.2 2 21 512 531 512 535 0.89 6 11 4.9e-06 0.00035 20.7 0.6 2 23 540 562 539 562 0.95 7 11 2e-07 1.4e-05 25.0 1.5 1 23 569 591 569 591 0.98 8 11 0.00071 0.051 13.9 1.3 2 23 598 622 596 622 0.90 9 11 0.00052 0.037 14.3 1.5 1 23 628 650 628 650 0.98 10 11 1.9 1.3e+02 3.1 1.9 1 23 656 681 656 681 0.93 11 11 0.01 0.71 10.2 3.8 1 23 687 710 687 710 0.96
Sequence Information
- Coding Sequence
- ATGTTAGAACCGGATAATACAACGGTGTGTCGCGTGTGTACAACGGTCATCAGCACATCAAATGCGGAGTCCTTATTTTCCATGATAAATACGAAAAATGGAGATGATTTGATCAGAACCATCGTTGATGCAATACGAGAGTTTGCGAATGTTACGGTGTCCATCAATGATGAACGATCCAAACATATTTGCTTAGTTTGTTTGGATGCATTGGAAAATGGAATCCAATTGCAAAATCAGATCCGCGAAAACGAGCTTGCAACTTCACCCATGTTGGATACCATTAATGTGCCGAAAAACGAGGACCTTGATGCGGATGTGTACGACCTTGAGTATCTGGACGAATTTAAAGATGATATCACACATACGCCTGACCTTATGATAAAATCCTCAAAACCAGAAATACTCGAAGATTCACTATCGGATGCATTGTGCCCTCAAGAGGACAATGACCTACCCGATCAGTTGGCCGTCCAACTGGCGGAAGAATTGGAGTGCCTTGAGAACGAATTGCCCGAGCAAGGAAAGTTTACCTTTGAAATGCCTCCTGTCGAGCTGATAGCACAACAACTGTCTTTTGGCCGATTTCAGTACCTTGAAATTTGTGGTGAACGGTGTTGTGGCTGCGCACACATTGCTCCTTCACGGGACGCACTGATGGAGCACGCAAAAGAAGTGCATTCACAAAACTATTACGCCGATAGCAGCTACACTTGCCCCACCTGCTATGGAAAGTTTACGACCGAAAAAGGCCTCGCGGCTCACACACAATACTATTCGTACAGCGATGTTTTCGTGTGCACCGAATGCCAGGAGGCATTTAATTTCCAGGGTCAACTGATGCTGCACCTGAAGCAACAACACGACTACCAAGAAGAAGAGGAAGAAGAATCAGATCAAACTAATGATGGTCAATCGTTGAAAAAGAAATATCCTCGCAAGACTGACGGCCAGCAAAAGCTCGCCATTCCGGACGAAAAACTTATCAAGGAAACAAAAGAATTCCCTCAGTATCGTGAGTTTTTACTCGAAGGAAAACATTGCTGTGCGTGTGGATTTTGCAGCGAATCTATTGACTCGCATGTTGCGGAAGCACATCCGCACAAGGATTCAGCGAGCGCTCTGCAATGTACAATTTGCCGCCAAAAGTTCGCTTCCCACCGGCATCTCATGCTTCATGAGGAAGATCGCAAAAAGATGAGCTATCTCTACGAATGTCGGCTCTGTGGCAAGCTCTTTTTAAAGAAAAACCTACTCTTGAAACACATACAAAAAGAGGTGCGTCCTCCCAACGAAAAGCATGCAGATACAGACGGAATCGCAGATTCAACTGAAAACGCTGTCGGCCAAAAACCATCGGCAAGTTCGAGTACGGTAAGCGTAAAATGTTTCTGCTGCTGCTTTAGACGCTGCAAAGACGAGTTCGCCACCGAAGAGGCACTACTCGAGCACGCTTGTGAGACACACACTGGTCGCCGAAAAGAAAACGAAAACAAACTATCTCAGACATTGGAGGTGGTCACTGAAGAACGCGTCTGTCCAATTTGCATGCTACTATTCGAGTCGGCGGAGAAGCTGAAGCAACATCGGTCCTACAAAATGCACGCCGAAAAGCAAAGCTGTTATATTTGCGGACGAACTTTTATGCGAAAGTCAGGTCTGAGGGAGCATATGGAGCGTGAACATCTCGATCTTCCTCCACGGTACGCTTGCGAGATTTGTGGCAAAAATTTCATCACCCGTTCTACGCTCAACCACCACCAGAAGGTGCACGGGCCTTTCGAGAGCTGCCCATGTGACGCCGAGGACTGTGACTTAGTGTTTCGCGATGAGCATCTAATGCGTCGACACTATCGGAATGTGCACGCCGAGAACCGGCCATACGTTTGTCGGTTTTGTACGAAAACGTTCCGTACCAAAGAATCCATCGATATCCATGAACGAATGCATACGGGTGAAAAACCTTTTCCTTGTCGTCACGAGGGATGTTTGAAACGATTTGCCCACGGAACGGATCGGGCACGCCACGAGCGATCGGTGCATACGGGCGAAAGACCGCACAAATGCTCGCTGTGTAGTATGAGCTTCTTGCGTAAAAGAGAACTAAGAAAGCATACCGAAAAGGTACACAAGGAAGTTTGA
- Protein Sequence
- MLEPDNTTVCRVCTTVISTSNAESLFSMINTKNGDDLIRTIVDAIREFANVTVSINDERSKHICLVCLDALENGIQLQNQIRENELATSPMLDTINVPKNEDLDADVYDLEYLDEFKDDITHTPDLMIKSSKPEILEDSLSDALCPQEDNDLPDQLAVQLAEELECLENELPEQGKFTFEMPPVELIAQQLSFGRFQYLEICGERCCGCAHIAPSRDALMEHAKEVHSQNYYADSSYTCPTCYGKFTTEKGLAAHTQYYSYSDVFVCTECQEAFNFQGQLMLHLKQQHDYQEEEEEESDQTNDGQSLKKKYPRKTDGQQKLAIPDEKLIKETKEFPQYREFLLEGKHCCACGFCSESIDSHVAEAHPHKDSASALQCTICRQKFASHRHLMLHEEDRKKMSYLYECRLCGKLFLKKNLLLKHIQKEVRPPNEKHADTDGIADSTENAVGQKPSASSSTVSVKCFCCCFRRCKDEFATEEALLEHACETHTGRRKENENKLSQTLEVVTEERVCPICMLLFESAEKLKQHRSYKMHAEKQSCYICGRTFMRKSGLREHMEREHLDLPPRYACEICGKNFITRSTLNHHQKVHGPFESCPCDAEDCDLVFRDEHLMRRHYRNVHAENRPYVCRFCTKTFRTKESIDIHERMHTGEKPFPCRHEGCLKRFAHGTDRARHERSVHTGERPHKCSLCSMSFLRKRELRKHTEKVHKEV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00096602; iTF_00109365;
- 90% Identity
- -
- 80% Identity
- -