Asin000161.1
Basic Information
- Insect
- Anopheles sinensis
- Gene Symbol
- -
- Assembly
- GCA_000441895.2
- Location
- KE525346.1:1596163-1602434[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.045 3.2 8.2 2.8 1 23 206 229 206 229 0.95 2 17 0.45 32 5.1 4.0 1 21 242 262 242 263 0.95 3 17 0.032 2.3 8.7 0.7 1 23 304 327 304 327 0.94 4 17 0.049 3.5 8.1 3.4 1 23 367 390 367 390 0.96 5 17 4.9e-06 0.00035 20.7 0.5 1 23 430 452 430 452 0.98 6 17 0.039 2.8 8.4 2.2 1 23 475 498 475 498 0.89 7 17 2.4e-05 0.0017 18.5 0.2 3 23 540 560 538 560 0.98 8 17 0.25 18 5.9 4.2 1 23 566 589 566 589 0.96 9 17 0.0017 0.12 12.7 1.6 1 23 620 643 620 643 0.96 10 17 0.00048 0.034 14.4 1.0 2 23 664 686 664 686 0.97 11 17 0.042 3 8.3 0.2 2 21 700 719 700 719 0.96 12 17 2.2e-06 0.00016 21.8 0.7 2 23 727 748 726 748 0.96 13 17 0.00044 0.031 14.5 1.0 1 23 754 777 754 777 0.96 14 17 0.0007 0.05 13.9 1.6 1 23 790 812 790 812 0.97 15 17 0.04 2.8 8.4 4.8 5 23 821 839 818 839 0.95 16 17 0.06 4.3 7.8 2.5 1 23 843 865 843 865 0.98 17 17 0.0046 0.33 11.3 0.2 1 23 871 894 871 894 0.93
Sequence Information
- Coding Sequence
- ATGGCACTAACCGCTCTGTGCCGAACTTGCGCTGGTGAACAATCGATGGACCAGCTTGTGGATATCTTTGAAGTTTACGATCAAGATGAGACCATCGCGGAAATGATCGTCGAGCTAACAGGACTGACGGTGGAAGACGATACCAATTTGCCCACCGTCTGCTGTACACAGTGCCAAGTAGACCTCATCGCAGCCGTCGCCTTTCGTCGCAAATGCATCGAATCGGAGAAGCTCATACTCGACCACCTAAGAGAACAAAACTGCACACAAATACTGCAGTTGGACGCTGTAGACGACGCACAGTCCGAAAAAAGTTTAGAGGACGATTTGGAACAGGAAACGGTTCAAATTTCCAGCATTGAAAGTTACATCGCGTTAATTGAAGATATACAAATTTGTCGCGGCGAAGAACAGTCCCATGGTCCCTCGTGTGAAACTGAACAGGATCCTCAAGGAGGAGGAGGAGATGAAGAAGAAGAAGAACAGCATATTCAAGAAGAAGAAGAAGCAGAAGTACAGGATACAAACTTACTCAATTTCAATGAGAACAAAGTAGCTAATGATACAGACAAGTCTTTTAACACCACCATTCTATCGGATCAAAGCCAACTAAGCCACAAATGCTGTGGGTGTAGTGCGAGCTTCGAAACTGAGCAGGATTTGATGGAACATTCGCAGTCAACACACGCCCTCAATCCACCTACGCCGGACCCAACGAGACCATTCCAGTGCAACATTTGCTACTGCTGTAGAAGAACAGAACGGGGTCTAGAACAGCATCGGAAAGTGCTGCAGAATCTGTGGCTGAAAAAGACCTCCATTGGCGCACAAGCACAAGCAGAGGCTAACGCAAACAACTCCGCGAATACTGCTGAGACGGTTGAGGTCGAAGCTGTGAATACTTGTTTTTACGAATGTAGCGTTTGTAATGAGAGCTTCCTGGATGTGAGTTCATTGCACGATCATAACGCAACATTTCATGGCAAAGAAACGGCCAATGCAGACATGAATGACAGTTACAACAACGTGGAAATGATCGATAATGGATCAACCGACGAAGCGTGTGAGATGACGTTGCAGGAACCGGACGATCTTAAATACAGCTGCTGCGGGTGCACCATGTGCTTCGGGACCGAGAAGGAGTTGATGGAACATTCCGAAACGACACATGCACCGAATGCGCCCCCGCCACACAAATCCAAACCGGTGCAGTGCAACGTTTGCTACAGCTGGTACTCGTCCGAGCGATCGTGCCGGGATCATCAGGTCTACATGGGCAACCGTCAGTTTGTGTGTCCGGTGTGCGGTATGCGCTTTGGTCGAGCTTCGGCGCTGCTGCGGCACAAACACACACACGATAGAGCGCCTGACTTGATGGAGGTGGGTCCGGATGTTGAACCCGATGTACAGGACAAGCCACAGCACAGCTGCTGCGGATGTTTTCTCTCCTTCGAAACCGAGGACGAATTGATGAAACATTCCGTTTCGGTTCATGCACCGAATGCGCCACCGGAGGACGACAACAAACCGGTGCAGTGCAACATTTGCTACTGCTGGTATTCCTCCGAACGGGCGTGCCGGGATCATCAGGTCTACATGACCAACCGGCGGTTCGGGTGTACGGTTTGCGGGCTGCGCTTCGGTCGTGCTTCGGCGCTCGCGCGCCATCGCAATACGCACGAGGAAGCACTCATATTTTCGTGCAAATATTGTGCAAAACTGTTTTCCAGCACGCACCAACGGTTGAACCACGAGAAACGGGAGCATGAGAACCAGCTCGCAAACGGAAGCGACACCGAATCGACCGGTGAGGATCGGCTTTTGCGCATCCGCAATACGCACGAAAAGCTGCTCTTATTTTCGTGCAAATATTGTGAAAAACAGTTTCCCAACGCGTACAGCAGGATGAGCCACGAGAAACGGGAGCATGAAAAACCGCCCGTAACGGAGACGGAAGCCGAAACGGCCGGTGAAGATCCGACGAAGCGAACATGCTGCGGATGCAGTAAAACTTTCGCTAGCGAGCAGGAACTGATGGACCATGCCCGTACGGTGCACGCCCCGAATGCGCCCCCCGCAGACCCCGCCAAACCGGCCCGATGTAAACTCTGCTATCGAACCTACCGATCCGAGGCCGCCGTTCGGGTGCATCAACGTTGCATGCGCATGCGCTCGCTGCAGTGTGCGACCTGTGGCAAGAGCTTCGCAACACGATCGCATCTGAGCGCACACGAGAACGTTCACACCAAGGCGTTGATCTACGCGTGCGCCCATTGCGACGAAAAGTTTGCCAACAAAACGGCCAAACAGAAGCACATCTTACGGGAACATGCGTCGGTGGAAACGAGGGCAAAGTCCGCCACCAAGCACGTTTGTCTCACGTGCGGAAAGGCGTTCTATTCTATTTTCTACCTGCGAGACCACCTGAAGCTGCACGCCGACGATATGCCGCACAAGTGTCACTGTGGTGCGAAGTTTAAGCTGGAAAAGTACCTCAAAAGACATATGCAAATTCACAGCGGGAAGTACACGTGCCAGTATTGCACGCTTGCGTATCGCTGCGCGTCCATGCTGCGGGACCACGAAAACCGGCACACGGGAAACAAGGAATTTCCCTGCGACATGTGCAGCAAACGGTTCTACGGGAAAGCGGACGTGGCAAAGCATCGTGCTTACGTGCACTTTAAACGAGGCAAACTGGCTAAAGCTTCTTCCTGA
- Protein Sequence
- MALTALCRTCAGEQSMDQLVDIFEVYDQDETIAEMIVELTGLTVEDDTNLPTVCCTQCQVDLIAAVAFRRKCIESEKLILDHLREQNCTQILQLDAVDDAQSEKSLEDDLEQETVQISSIESYIALIEDIQICRGEEQSHGPSCETEQDPQGGGGDEEEEEQHIQEEEEAEVQDTNLLNFNENKVANDTDKSFNTTILSDQSQLSHKCCGCSASFETEQDLMEHSQSTHALNPPTPDPTRPFQCNICYCCRRTERGLEQHRKVLQNLWLKKTSIGAQAQAEANANNSANTAETVEVEAVNTCFYECSVCNESFLDVSSLHDHNATFHGKETANADMNDSYNNVEMIDNGSTDEACEMTLQEPDDLKYSCCGCTMCFGTEKELMEHSETTHAPNAPPPHKSKPVQCNVCYSWYSSERSCRDHQVYMGNRQFVCPVCGMRFGRASALLRHKHTHDRAPDLMEVGPDVEPDVQDKPQHSCCGCFLSFETEDELMKHSVSVHAPNAPPEDDNKPVQCNICYCWYSSERACRDHQVYMTNRRFGCTVCGLRFGRASALARHRNTHEEALIFSCKYCAKLFSSTHQRLNHEKREHENQLANGSDTESTGEDRLLRIRNTHEKLLLFSCKYCEKQFPNAYSRMSHEKREHEKPPVTETEAETAGEDPTKRTCCGCSKTFASEQELMDHARTVHAPNAPPADPAKPARCKLCYRTYRSEAAVRVHQRCMRMRSLQCATCGKSFATRSHLSAHENVHTKALIYACAHCDEKFANKTAKQKHILREHASVETRAKSATKHVCLTCGKAFYSIFYLRDHLKLHADDMPHKCHCGAKFKLEKYLKRHMQIHSGKYTCQYCTLAYRCASMLRDHENRHTGNKEFPCDMCSKRFYGKADVAKHRAYVHFKRGKLAKASS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -