Aqua002671.1
Basic Information
- Insect
- Anopheles quadriannulatus
- Gene Symbol
- -
- Assembly
- GCA_000349065.1
- Location
- KB665399.1:3154810-3160211[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 1.1e-05 0.00053 19.8 2.0 1 23 280 303 280 303 0.96 2 12 0.0042 0.2 11.6 0.6 2 23 310 332 309 332 0.94 3 12 0.00084 0.041 13.8 2.3 1 23 338 361 338 361 0.95 4 12 0.0092 0.45 10.5 0.6 2 23 368 389 367 389 0.94 5 12 0.00011 0.0055 16.6 1.2 3 23 397 417 395 417 0.96 6 12 1.3e-05 0.00065 19.5 6.4 1 23 422 445 422 445 0.97 7 12 0.00058 0.028 14.3 3.2 1 23 697 720 697 720 0.90 8 12 6.4e-05 0.0031 17.3 0.4 2 23 727 749 726 749 0.96 9 12 0.00084 0.041 13.8 2.3 1 23 755 778 755 778 0.95 10 12 0.00014 0.0066 16.3 0.9 2 23 785 806 784 806 0.96 11 12 0.043 2.1 8.4 1.6 1 23 812 834 812 834 0.91 12 12 4e-05 0.002 18.0 3.8 1 23 839 862 839 862 0.97
Sequence Information
- Coding Sequence
- ATGGCGGCAATTCCACGCGAAATAAATAAAGTCTGTCGGCTTTGCCTGTGCCAGGATGAGAATATTCTCTTTCCTGCGACCAAATTCATCGACTCCCAGCTGACCCTGGACGATGTGGAACGAGTAGCCGGTGTACGGATCGTGGAACAGGAAAGCATGCGCTGCGTTTTGTGTGTCGATTGTAACAACAAACTACGACACATCAAAGCCTTTAAGGCCTCCTGCATCAGCAATGATGAGACGTTTAGAAAGTGGTTTACAGTGGCCGATAAAGATTGTTCGCGAGACGACACTCATCCACTGAAGTTGAATGCTGCAGCGCAAGCATTCAACGGTGCGGCGCGCGAAACTGACCAGTGTAACGATTCGGCGAATGAGTTCGATGAGGCAACATTTTTCGACAACAACATTGTAGTCATCAAGGAAGAAGAAATTGACGACCAGGCGGTCAAATACATCGTTCAAGAAATGTATGAAGACATGGAAGTACTCACAGAAGATGTTGTTGACTTCGATGTTGATGATGATGATGAAGATGCTGAAGAATTTTCCGAGGACATGAAAACAGAAGGGAGCCAAACATCGATAGATGATTTCGTTACCAGCGATGATCCGGGCGAGGCATCCGTACCGTACGAACCGTACGAACGGCAGCCAACAACGCCAAACGAAACTTCCGCACCAGCGATACCAGCGGACCATCAAACAGTAACTCCCGCCGCCAGTGAGGAAACGGGCAAGAAGAAGAATCCACAAAAGAAAACCCTTTGCCCGCTGTGCGGCAAATTAATACTCTCGCTAAAAGACCACATGTTGAGTCACACGGGGGAGAAACAATACCGCTGCAAGTACTGCCCCAAGACCTGCGGTCGGAAAGGATCGCTGCGGCTGCACATGCAAGCCGTCCACCTGAAAAAGATTGTAAAGAGCTGTGAAATATGCGGCAAAGGCTTTACTTACGTGGAGTCGCACGAAGCGCACATGCGCGCCAAACACGGCTTCGGTGAACCATTTGAATGTACCATATGCAACATTAAATTTCGCCATAAAGGCGGTTTGCGGGGTCACAACAATCGCAAGCACAACGATGAAAGCAACTGTGAGTGCCCAACTTGTGGCATGAAATTTCTCGACAAGAAAGGATTACGAGCGCACAGCATAGTGCACTCGGACGAGCGACCGTTTGGCTGCCGCTATTGTCCAAAGATGTTCAAAACTGCTAAAACGCTGAAAAACCACGAAAATCTCCACCAAGGTGTAACATTTTCCTGTACGATGTGCGGAAAAAGCTATAAGCATCAATCGCTGCTATACGTGCACATGAAAAAATGTCATGACGAGGTTTGCCGACTTTGCTTGACCGAGGACGAAGTTATTCTGTTTCCCGCTGCGAAGCTGATCGACTCCACGCTGACCGTGGACGATATCGAGCGATTTACCGGTGTGCGGATCTGCGAACAGGAACGATTGCCGTACGTCGTGTGCATCGATTGTAATAACAAGCTAAGGAAGTTCATCGCCTATCGTGCTTTCTGCACAAACAATGATGTTCGGTTTAGGAAATGGTTTGCGGTAACTCTTTCGGACGATTTGAGCGACCCGGATCGGATTAGTTCATCGCTCAAAGCCCTCATAAAGGAGGAATTGACCGCTGATCAACGCGAAGCCAGCAAACGTTACAGTCCTATCGACGATTGTAACGATCAAGCGTTCGATAGTAAGCAGAAAGTTCAAGAAATTGAACAGGGCGAACAAAGGATAGAAGATGCTACTGCCCTAGAGGGTACGGACAATATCGCCATAGATGATGAGGATCTGGGTCTTGAGCAGGTACTTTTGAGCGATAAGTTGACGCCTGATCCATTCGAGACAAACAATACCCTGCCATCCACCCACCAAAGCGAGCAGCAACGGAAGCAACGGCGAAGGGTGACAGCATCGCCCGCTGCCAAAGACAAACACGCCACACGGGACAGCCAGGAGCAGGACAGCAAAAAGCATGTACCGGCCAAGCAGCTGTGCCCGCTGTGTGGCAAACTGGTGCACTCCATGGCAGACCACATGCTGTCCCATACGAAGGAACCGAAGTTTTCCTGCCAGCACTGCCCAATGACGTGCAGCCGCAAATCGTACCTCAAGCTGCACGTGGACGCCGTGCACAAGAAGCGCATCATAAAGAGCTGCGAAATGTGCGACAAAGGGTTCAGCTATATCGAATCGTATGAGGCTCATATGCGATCGAAGCACAACTACGGAGAATCGTTTGAATGTACCATATGCAACATTAAATTTCGCCATAAAGGCGGATTGCGGGGTCACAACAATCGCAAGCACAACGATCAAACCAACTGCTCCTGTGACATTTGTGGCATGAAGTTTCAGGACAAGAGAGGGCTACGCGCACATGGTAGGGTACATTCGGACGAGAAACCCTTTGCCTGCCAGTTCTGCCCGAAGCGCTTCAAGAGTCCAAACGCGCACAGAACGCACGAGCTGATCCACAAGGGCGTTGTATTTCCGTGCACGATGTGCGATAAAACGTACACGTACAAATCGTTGCTCAATATGCACGTGAAAAAATGTCACATCAAGCAGGAGGAGAGCGCGGAAAATTAA
- Protein Sequence
- MAAIPREINKVCRLCLCQDENILFPATKFIDSQLTLDDVERVAGVRIVEQESMRCVLCVDCNNKLRHIKAFKASCISNDETFRKWFTVADKDCSRDDTHPLKLNAAAQAFNGAARETDQCNDSANEFDEATFFDNNIVVIKEEEIDDQAVKYIVQEMYEDMEVLTEDVVDFDVDDDDEDAEEFSEDMKTEGSQTSIDDFVTSDDPGEASVPYEPYERQPTTPNETSAPAIPADHQTVTPAASEETGKKKNPQKKTLCPLCGKLILSLKDHMLSHTGEKQYRCKYCPKTCGRKGSLRLHMQAVHLKKIVKSCEICGKGFTYVESHEAHMRAKHGFGEPFECTICNIKFRHKGGLRGHNNRKHNDESNCECPTCGMKFLDKKGLRAHSIVHSDERPFGCRYCPKMFKTAKTLKNHENLHQGVTFSCTMCGKSYKHQSLLYVHMKKCHDEVCRLCLTEDEVILFPAAKLIDSTLTVDDIERFTGVRICEQERLPYVVCIDCNNKLRKFIAYRAFCTNNDVRFRKWFAVTLSDDLSDPDRISSSLKALIKEELTADQREASKRYSPIDDCNDQAFDSKQKVQEIEQGEQRIEDATALEGTDNIAIDDEDLGLEQVLLSDKLTPDPFETNNTLPSTHQSEQQRKQRRRVTASPAAKDKHATRDSQEQDSKKHVPAKQLCPLCGKLVHSMADHMLSHTKEPKFSCQHCPMTCSRKSYLKLHVDAVHKKRIIKSCEMCDKGFSYIESYEAHMRSKHNYGESFECTICNIKFRHKGGLRGHNNRKHNDQTNCSCDICGMKFQDKRGLRAHGRVHSDEKPFACQFCPKRFKSPNAHRTHELIHKGVVFPCTMCDKTYTYKSLLNMHVKKCHIKQEESAEN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00101136;
- 90% Identity
- iTF_00101136;
- 80% Identity
- -