Apun006932.1
Basic Information
- Insect
- Anopheles punctulatus
- Gene Symbol
- -
- Assembly
- GCA_000956255.1
- Location
- JXXA01017261.1:4151-7014[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 1.9 1.5e+02 2.8 1.2 2 23 187 209 187 209 0.94 2 17 0.00069 0.057 13.7 0.2 2 21 219 238 218 239 0.95 3 17 0.18 15 6.1 2.2 1 20 246 265 246 267 0.93 4 17 2.9 2.4e+02 2.3 0.9 2 23 381 403 380 403 0.89 5 17 0.044 3.6 8.0 0.0 3 20 415 432 414 434 0.93 6 17 0.0098 0.8 10.0 3.3 1 20 441 460 441 467 0.94 7 17 0.38 31 5.0 4.8 2 23 538 560 537 560 0.93 8 17 0.51 42 4.6 0.1 1 19 573 591 573 593 0.94 9 17 0.00099 0.082 13.2 0.1 1 21 603 623 603 628 0.95 10 17 0.013 1.1 9.7 0.3 1 23 687 712 687 712 0.93 11 17 0.39 32 5.0 0.5 2 20 729 747 729 749 0.94 12 17 7.6e-05 0.0063 16.7 1.0 1 23 756 779 756 779 0.93 13 17 3.1e-07 2.5e-05 24.2 0.2 1 23 786 808 786 808 0.98 14 17 7.6e-05 0.0063 16.7 0.3 1 23 814 837 814 837 0.95 15 17 6.9e-05 0.0057 16.8 0.7 1 23 843 865 843 865 0.98 16 17 0.0059 0.49 10.7 4.5 1 23 871 894 871 894 0.92 17 17 1.7e-05 0.0014 18.7 0.9 1 23 900 922 900 922 0.99
Sequence Information
- Coding Sequence
- ATGCATCGATCGACtaagcgaaaaaaagtgtCCGATCCCAGTGAGGACGTGTTGGCACGGTGCTGCATCTGCTCCAAACAGCCTGCAGGTTCATTACTAGAGCTAGCAACAGTGGTTCAACAAGGAAGGGGGACAACGATTGCAGATATAGTGGAGCAGGTCGCAGGCATCAAAGTAAAACAAGTTCAGCAACGCATTTGTAGCTCTTgttggagcaaaataaaagcggCCTTTGCAATACAGAATGAAATTCGTGACTCGGGGTGCATAAGTCATACCGCGGAAGAGGATACAGAAAGCGATACGCAGGAAGATTGGACGGAGCTGGATGTAAAGGAGGAACGTGCAGAGTGCGAATATTTGATCGAATATCTCGACTCGGATGTTGACGACATTAGACCGCAAGAGGAAAATGTTGGCGAGCAATCGCACGCCGCAATCGAGCGGTATGAGAAAGGATCGGGAAAAGTTACACGCCAGTTTGTAATGCCCCGACAAGCGTCGATCGTGAAGGATGTCCTGTACGAGCAGTACCGAGAGCTGGAAGTGTCTGGTGAGCGCTGCTGTGGCTGTAGCTTCGTGGGCGAAACACGCAAGGAACTATTGCAGCACTCGGAAACAGTGCACGCGGTCGAGATACAGGATTGTGGCGATTATTGTCCTATATGTTTCTACAAATTCTCCTCCGATCGGCAGCTCGAGCAACATATCCGAGAGTTTCAGCAGCCTTTGATGTTCGTATGCCTGCGATGTAATCGGTTTTACAATCGACATAGTAGGCTTGTCAACCATTTTCTGCGCTGCGGCGAAAAGTTAGATGGAGAAttgagtgaaagtgaaatagAAGACACAGAAGTGAATGAGGGTGGTGTGGTTGAGCAAGAGAACGAGGGTGAAGATGATGTTGAGAGTGGCGAATATTACTTTACCGAAGAAGCTAATGCAACTGAAGACTTCGGTTCACGAAAAACATTCTCCGACCCACGGATGATGCACCGCTTTCGGAAAcaatttgaagaaatatttgccAACGAAAAACTCTCATGCGACCTGAACGAGGAGGGCCTAAATGTGCAGGAAATCCAAATTGCAGCTCAGCAAACGTTTACCACGTTCaagtttgttcgtttgcgtGGTTTGCGTTGCTGCGGCTGTACCTACACCACCTTCTCTAGCGGGATGATGATCGACCATGGCAAGCTGGTACATCTAGCCGAACAAAGCGTTCAAGACGGCCCATCGTGCGGGCAGTGTGGGGTCCAATTCCCGAATGAAATGGAGCTCGTTAAGCATCTCAGTTTCTTCACAGCCAAACAGCTGTTTTTCTGCACGATCTGCGATAAATCGTTTCTCACACACGACAGCTTACGATATCATCAGGCGCACAACGAACGACACCGTCAGCTGCAGCACGAACAATACCGTATCTTTACATCGGATACGTTCGTCGAGCTCGACCAGAACGACGTGGCGAACGAGCTACATAAGCTGTTAGTCGAGAAGGTTACGCATCGGCCAAAGATCGTGCGAGCTATTGAGATGCCGGATGATCGTTTTATACTCGGCGTCGAAGAGCACAACAACTACCGGATCCTTACCGTGCAAGGAGTCAGCTGCTGTGGTTGTACGCGGCTTTTCGATACCGAGGCGCACCTTCATCGTCATTCGAAGCTCGAGCACTATCAGCCCCCGGTGTCGATTGGCCGTACGTACGGACACCAGTGCGAGGTCTGCTACGCCGTGTTCGACTTTGAACGGGGGCTTACCATGCACAACGCGATTAGACGTGCTGGAAAGAAGCGCTTGTTTGTCTGCAAGCTATGTGGATTGCTTTTTGCAAAAAAGTTTGGCCTCGCCCGACACATGCAGCTGGCACCGAACCATCTGTCGCGATTAATTGTTGATTGCGAACGCAATGGTAATGGCGATTTGGAAGCATCGGGTAGTGGCACGGTACCGGTCGATGCTATCGAATCGGATCCACGCGTGCAAGAAGCGTTACAGTTGCACCGCTCGGTGGAGCAGGCAGGAGTGGAAAAGGCGGGCCATCTCGTTTGGTATCGCTGCTGTCTCCCCAAGTGTCCGGAAATGTTCACCGAAGAGGAGGCCTTACTGGAACACACACGGGAAGAGCACAATGGACGGcgtaaagaaaacgaacaggaacgcaaacaaaacacgaacgtcTGTCCCGGCTGCTGTAAAGCATTCCAAACGTTGGCCAAACTGATGTGGCATCGATTTCAACGATTCGTACCCCGCAATCACGATTGCACCCAGTGTGGCAAGACGTTCGACAAATGGCCCAAGCTGAAGATGCACATAGAGCAGGAGCACAGTGAAACGCCACCGCGCTTCGAGTGTACGGAGTGTGGAAAGGTGTTCGTGGTGCGATCGCGGCTGAAGGCCCACATGCAGATACACAGCGACCGGAAGGACCACGTGTGCGATGTGTGCGGCGATGCATTCGTCAACAAGGGACTGCTAAAACGCCATCGAAGGGCTCTGCACTCGACCGAACTGCTGTTTGAGTGTAAACTCTGCACGAAAAAGTTTGCCGTAGTGGAGAAACTCAAGATCCACCAACGAGTACACACCGGAGAACGTCCGTACGCATGTGGCTATTGCCATCGTACATTCAGTCACTACACGGATCGTAAGCGACACGAAATGGCTACACACACGGGGGAGCGTCCGTACAAGTGTGAGCTTTGCCCAGCATCGTACATACGCAAACATGAGTTGGCGATGCACATGCAGAAGCATGGACCGGGAGGCAATAGCCCAAGTGTTTCGGGGTGA
- Protein Sequence
- MHRSTKRKKVSDPSEDVLARCCICSKQPAGSLLELATVVQQGRGTTIADIVEQVAGIKVKQVQQRICSSCWSKIKAAFAIQNEIRDSGCISHTAEEDTESDTQEDWTELDVKEERAECEYLIEYLDSDVDDIRPQEENVGEQSHAAIERYEKGSGKVTRQFVMPRQASIVKDVLYEQYRELEVSGERCCGCSFVGETRKELLQHSETVHAVEIQDCGDYCPICFYKFSSDRQLEQHIREFQQPLMFVCLRCNRFYNRHSRLVNHFLRCGEKLDGELSESEIEDTEVNEGGVVEQENEGEDDVESGEYYFTEEANATEDFGSRKTFSDPRMMHRFRKQFEEIFANEKLSCDLNEEGLNVQEIQIAAQQTFTTFKFVRLRGLRCCGCTYTTFSSGMMIDHGKLVHLAEQSVQDGPSCGQCGVQFPNEMELVKHLSFFTAKQLFFCTICDKSFLTHDSLRYHQAHNERHRQLQHEQYRIFTSDTFVELDQNDVANELHKLLVEKVTHRPKIVRAIEMPDDRFILGVEEHNNYRILTVQGVSCCGCTRLFDTEAHLHRHSKLEHYQPPVSIGRTYGHQCEVCYAVFDFERGLTMHNAIRRAGKKRLFVCKLCGLLFAKKFGLARHMQLAPNHLSRLIVDCERNGNGDLEASGSGTVPVDAIESDPRVQEALQLHRSVEQAGVEKAGHLVWYRCCLPKCPEMFTEEEALLEHTREEHNGRRKENEQERKQNTNVCPGCCKAFQTLAKLMWHRFQRFVPRNHDCTQCGKTFDKWPKLKMHIEQEHSETPPRFECTECGKVFVVRSRLKAHMQIHSDRKDHVCDVCGDAFVNKGLLKRHRRALHSTELLFECKLCTKKFAVVEKLKIHQRVHTGERPYACGYCHRTFSHYTDRKRHEMATHTGERPYKCELCPASYIRKHELAMHMQKHGPGGNSPSVSG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00103151;
- 90% Identity
- -
- 80% Identity
- -