Aplu005462.1
Basic Information
- Insect
- Anopheles plumbeus
- Gene Symbol
- -
- Assembly
- GCA_034621735.1
- Location
- JAOEFI010000004.1:17768907-17773427[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 2.6e-05 0.0023 18.3 1.7 1 23 197 219 197 219 0.97 2 12 0.003 0.27 11.9 0.4 1 23 225 247 225 247 0.97 3 12 0.00059 0.052 14.1 5.0 2 23 376 398 375 398 0.94 4 12 2.4 2.1e+02 2.7 0.8 2 23 405 427 404 427 0.77 5 12 0.02 1.7 9.3 2.4 2 21 435 454 434 456 0.89 6 12 0.031 2.8 8.7 10.1 1 23 462 484 462 484 0.95 7 12 0.0032 0.29 11.8 0.4 2 23 490 511 489 511 0.97 8 12 2.9e-06 0.00026 21.4 0.4 1 23 517 539 517 539 0.98 9 12 0.00064 0.057 14.0 0.2 1 23 545 567 545 567 0.97 10 12 0.00049 0.044 14.3 0.4 3 23 575 595 573 596 0.95 11 12 1.1 94 3.9 0.1 1 23 610 632 610 632 0.94 12 12 0.0018 0.16 12.6 0.3 1 20 1215 1234 1215 1237 0.94
Sequence Information
- Coding Sequence
- ATGGACCACGCATTTTCGATTTGGCAGGTGAGCACCGATCACACGTCCAGTGCCGCATCCACCGTCGCTGCCGCCGCGAGAGGAAGCCTGCAAATCATGAATTTTGAAGGCACGGGTGCGTCGGGCCAGCTAATCGAAAGAACTGCAAGGATTTTCCAGCAACACGCAGGAACGACGGTCATGACCGAACCGATCAGGCTGCAGATTCCCGAACAGCGGCAGTACATTGTGGACGAAAGTTCGATTCAAAACATCGATCAGATGCCTCCGGCCAATCTGATCATGGACACAGTGGATACGTGCGAAGAGTCATCGAGTTTGGTGGCCACATCCGTTGATGGCCATGTTTATTATGACccggaatgtggaaaaataatgcagTCAACGAGCAGTAGCGGTGAGCAAATGGAATACGCGGAGGAGTGCGAAGTTATGGAGGAAGTGATCACGGACGATTGGGTACAATCGCAGGGGGAAGAGTGTGTTCAGGTCACTGTGGACCAGCTCGGAGCAAGCACAACAGTAGGGACGGTGGAGGACGacatttccgttccgctcgacCAGGACGAGTACACACTTTCGCGGCCATTTCCTTGCGATTTTTGCAGCCGCCGTttccggaaaaaaacgaacctgTTGAACCACATGATGGCACATTCGAATGATCGGCCTTACGTTTGTAATCTGTGCGGTGCGCAATACGGAAGACGCATAGATCTCACGAACCACTTCAAGCAGCACGCGTATGCTGCCAATGATCAGGAGGAGGCTGCCCTCCGGAGTGACCACGAACTCGACTACGATATCCCTGTCCTGCCGATGTCACACCACAGCAAACAACGTTCGCAACATACGAGCGAGGACGAGGACATGTTCGTCGAAGGAGCAAGGGCGATGAACTACAATTCGCAGCCTCCGATGCAGCTCATTTCGTCCACAAATTCGACAGCGACATACGCCAATGATTCTTCCAGCAGGATGCGGTATAGCATGGACCCAGCACCAACAACCGTTTCCGAACTCAACGGCACGACAGTGTTGAATGGAGCGAATGGCCCGGAGATAGAGGTAGATGATACCAGCGATGGGCAGCAGATGGAACACGGCACACTACAGCACTTGCTATGCTGCCGCGATTGTGgtaaaacgtttaaaaaatgCTCCGAACTGCTAGCACACAGTAAGAAAGCCCATGCACTAGACGAACCGCAGGAGTGCCAGCTTTGTGGCGACACGTTCTCCAATGAAACGATCATCAAGCACCACCTGCAGGAGTATCATCGAGATGAGCTCACGGACACATCGTGCGCCATCTGCGGAAAGCTGTGCAAAACCCAAACCAGCCTGATGAAGCATTCGTTTGATCACTCGCGCGAACGTTCCCATTGCTGCTCGAAATGTGGGAAAACCTTCCATCATATGGGGAGGCTCAAGCGTCACATGGGATCACACCGAAATAAGACCGTGCGGTGCGAGGTGTGTGGAGAGGAGTTTCCGGACGGACGAACTCTCATGAACCATCGACATTCACACTCGAAAGCTAACAATTATCCTTGTAAGGAATGTGGTAAAACGTTTGGATCCCGGTCCTCGCAGCAGATACATCTCCGCATTCACACCGGGGAACGTCCGTATGCGTGTCGCTTCTGTTGGAAAGCATTTGCGGACGGTGGAACATTGCGGAAGCACGAGCGGGTACACACGGGTGAAAAACCTTACGGCTGTTCTGTCTGTCCAAAGGAGTTCAATCAGAGGGTAGTCCTTCGCGAGCACATCCGAGCCCACCATTCGCAGCCTGATGCGATGCGAGGCAGTGCTGAACTGCCCTACTACTGTCCCGTTTGTTGTTCCCTGTTTGCTACAGCCGGGGCACTGGTACAGCACCTGATCGAGCACAGTGATACCAACACAGCGCAGAAACGTAAACCACCAACATACCCGAGGAAGTACAAACGTCGGCGAAAGCTGAAACCTCACGAGCTGGAGCGGTTGCAAAGCGGACGGCGGAAGCAAAAAGCAACTTCAACAACGACCCAGGATAATCATCAACCAAGCGGCAACGACGAAGAAACGTTGAATGGGGAGGATAGTGACGGGTTAGAGGAGCGAACGGTGTCCTTAGAACGTGACGATGGAACACTAAAAACCTCTAGAGAATTATTTCTCGAGTACGGCGGTTCAACGATACAGAAACTTGCGGTGGTGTCTACAAAGTTTATCTCACCTTACGAACTGCTTGGTGAGGGTACAGGAGGCAGCAATGGTGAGCCGAAAACAGATTTAGTTGCCGATGGCATGCTCGACGATAATGGTATTAATCTGCTTAGCAACGTTGTCCTTATGCATGGCCAAGGTGATGCGGCCAAAACGCAGGGTTCGAGTAAAATCAACAATAATCATCTCTCGGAATCACCCAACAAACGAAAGGGTAAGAGAGGATCAGGAGCAATCACCCAATCCGAGACTACTCCCGGTATTTGCGCGCAACAGCTTAAACGAGGGCCTGCCTCGAAGGCGCGCGGAGATGGCAAAAGGAACAGAAAGCTAGCGGTTAAAAGAAGTTCCGCCAAAAAAATTTCATCCACCACGGCTTCtgaggcggaagaaaatgtttcacaccAACCAGCAATAATTGGCGGTGTGGCCAATGCACTGGAAGCATTTTGCGagctggaaaggaaacgttcTCGAAGGCGCCCAATGCCATCATACGTGCGGGAGATACCATCGGATAGGATCTCGGAAAACTTCCCTCTTCTGGACGACGGAAACATAGATGATACGATGGAGGAGAGCCCTCGTTGTCTTTACGACCGGCAGCGACACATCTCTTCGACCAGTAGCGTTACtcgcgacgacgaggatgagCAACTGTTGATGGAAATTTCACGTGGGCATAAATACTCGGACCGGTTCAACAGCGACGTCGTCAATGACCTGGCGGAGATCCTCCGTTCACCCTTGAAAGGCGCATCTGGAGCAACAACGACTGTGCCACCGATGGACATTCTGGCTTCACCTTCCAGCCGTCATGCgatatttttcccttcaatccAGCAGGACAAATTCTCAACAAAGCAGAAAGCTCGCGCCAATAAGCCGAGGTCTAACTCAAGAGCAAATCAACGTGCAGCTGCTCCTTGCACTTCGTCGAATGCGACCACCCTCTCCGTCTCGCAGGATACATATTCAGCATCGCTCCTTTACAGCCACGGTCGACGGCTAACGCGACGTCAACTGGAAAGAGAGGTTAATTTCCTCAGTGAAGCTTTGGAAACGAAGATATCAAGTCCGGCACCAACGAAAGTCATCAACATGGGAACGTCCATGGCAGTATCTGCGATTCCCTTCGGTCAAGggcgatcgatcgttttcaaGCAGGAAAACGTAAACACTTCCGAGAAGCTGGCCGAGATGTTGCTTAACGATGGAATTCCAGCCAGTTTGGGAACGGAAAGAAGCAGCTATTCTGATCAGCAGGAAGGGCCACATTTCAGTGGGGAAGGTGAAATCTCGACAATGAAGTTTTCAGCCACCCAGGTGAAAGTTGAATGGAAACCAGAGGACACCGAGAACGACCACGAGGCCGAAACGAGCGAAGCGCCACAAACTAACTCAAACTCTTCTTCTGATGCGACTGGCTACCAATGTTCGATCTGTGCCGCATGTttcgaaaatcgatcgcaGCTCATTCTACATGTCCCGGTGCATATGTGA
- Protein Sequence
- MDHAFSIWQVSTDHTSSAASTVAAAARGSLQIMNFEGTGASGQLIERTARIFQQHAGTTVMTEPIRLQIPEQRQYIVDESSIQNIDQMPPANLIMDTVDTCEESSSLVATSVDGHVYYDPECGKIMQSTSSSGEQMEYAEECEVMEEVITDDWVQSQGEECVQVTVDQLGASTTVGTVEDDISVPLDQDEYTLSRPFPCDFCSRRFRKKTNLLNHMMAHSNDRPYVCNLCGAQYGRRIDLTNHFKQHAYAANDQEEAALRSDHELDYDIPVLPMSHHSKQRSQHTSEDEDMFVEGARAMNYNSQPPMQLISSTNSTATYANDSSSRMRYSMDPAPTTVSELNGTTVLNGANGPEIEVDDTSDGQQMEHGTLQHLLCCRDCGKTFKKCSELLAHSKKAHALDEPQECQLCGDTFSNETIIKHHLQEYHRDELTDTSCAICGKLCKTQTSLMKHSFDHSRERSHCCSKCGKTFHHMGRLKRHMGSHRNKTVRCEVCGEEFPDGRTLMNHRHSHSKANNYPCKECGKTFGSRSSQQIHLRIHTGERPYACRFCWKAFADGGTLRKHERVHTGEKPYGCSVCPKEFNQRVVLREHIRAHHSQPDAMRGSAELPYYCPVCCSLFATAGALVQHLIEHSDTNTAQKRKPPTYPRKYKRRRKLKPHELERLQSGRRKQKATSTTTQDNHQPSGNDEETLNGEDSDGLEERTVSLERDDGTLKTSRELFLEYGGSTIQKLAVVSTKFISPYELLGEGTGGSNGEPKTDLVADGMLDDNGINLLSNVVLMHGQGDAAKTQGSSKINNNHLSESPNKRKGKRGSGAITQSETTPGICAQQLKRGPASKARGDGKRNRKLAVKRSSAKKISSTTASEAEENVSHQPAIIGGVANALEAFCELERKRSRRRPMPSYVREIPSDRISENFPLLDDGNIDDTMEESPRCLYDRQRHISSTSSVTRDDEDEQLLMEISRGHKYSDRFNSDVVNDLAEILRSPLKGASGATTTVPPMDILASPSSRHAIFFPSIQQDKFSTKQKARANKPRSNSRANQRAAAPCTSSNATTLSVSQDTYSASLLYSHGRRLTRRQLEREVNFLSEALETKISSPAPTKVINMGTSMAVSAIPFGQGRSIVFKQENVNTSEKLAEMLLNDGIPASLGTERSSYSDQQEGPHFSGEGEISTMKFSATQVKVEWKPEDTENDHEAETSEAPQTNSNSSSDATGYQCSICAACFENRSQLILHVPVHM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -