Basic Information

Insect: Anopheles plumbeus
Gene Symbol: -
Assembly: GCA_034621735.1
Location: JAOEFI010000006.1:22541159-22543652[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 1.5e-05 0.0013 19.1 0.4 1 23 363 385 363 385 0.94

2 9 9.1e-07 8e-05 22.9 0.4 1 23 391 413 391 413 0.98

3 9 0.00039 0.034 14.7 3.8 1 23 422 444 422 445 0.95

4 9 0.004 0.36 11.5 0.3 3 23 452 473 450 473 0.93

5 9 4e-06 0.00036 20.9 1.5 2 23 512 534 511 534 0.96

6 9 0.035 3.1 8.5 0.4 1 20 538 557 538 560 0.91

7 9 0.00013 0.012 16.1 5.9 1 20 566 585 566 589 0.94

8 9 4.7e-05 0.0042 17.5 0.1 1 23 615 637 615 637 0.98

9 9 0.00027 0.024 15.1 4.4 2 23 646 668 646 669 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	1.5e-05	0.0013	19.1	0.4	1	23	363	385	363	385	0.94
2	9	9.1e-07	8e-05	22.9	0.4	1	23	391	413	391	413	0.98
3	9	0.00039	0.034	14.7	3.8	1	23	422	444	422	445	0.95
4	9	0.004	0.36	11.5	0.3	3	23	452	473	450	473	0.93
5	9	4e-06	0.00036	20.9	1.5	2	23	512	534	511	534	0.96
6	9	0.035	3.1	8.5	0.4	1	20	538	557	538	560	0.91
7	9	0.00013	0.012	16.1	5.9	1	20	566	585	566	589	0.94
8	9	4.7e-05	0.0042	17.5	0.1	1	23	615	637	615	637	0.98
9	9	0.00027	0.024	15.1	4.4	2	23	646	668	646	669	0.96

Sequence Information

Coding Sequence: ATGAAGTGCTCAGTACCTGGTTGCGACACCGATGAAAACGTCGTAAGCTACACGTCCGTCTTCTTCGTCAACATTCCAAAGGAGCCTTTGGTAAAGGAACAATGGCTTAACGTATTGGACGTGAACGACACCGAACTCATACGAGCACTGCTTGCTGGAGAGGCGAAAGTGTGCAGTTGTCATTTCACCGAAGACTGTTTTGGGCAGCATCCGGTATACGGATATCGCTATCTGCTCCCGAGCGCGCTTCCTACGATCCTGCCACATTCTAACTTCGAGAAACTGCTGCGGGAGCCATCTCCGccgaacgatgatgatatCGCATCAAACTGTTATTTCATGTACGTTAGCGATGCTTCGGAATCAATTGCGATCGGCCAGGAGGCGTTAGACTTGGTAGCTAACTTCAACGATATTAATCTCATcaaaaccgaagaagaagaaaaaacgatcaGCGCAGCAGATGACGAGGAGGAAGCCTTCGAGGAGATTGGTATCAAATATGAGGATGGGAAATactattttcttcaactcGATGGAGACCTCACATCAGAAGCCAACAAGGTGCCGTCAATCGACAAAGTCAATGAGCCACACGATAGGGAACCCTGGGAGAGTGGGATATGTACTAGCAATGATTTCCCTAATGATGACGCTGACAATGAAGTGCTGACAAACGAAGTCCggaatggcgaagaaaatatagAAGAGCTTCGCAGGGAGAATATTTTCGACGGAAGAGACGAAACTGTAGATTTCGTGGAATATCTCGTGGAAACACCGCAAGAGATCGTTCTGGCAAATATAGGAACAATTGAGAGCGTGCTGGTAAATAATGGCGCCAGTAGCGAGCAGTtcgtcgacgatgatgaaattgTAAATGAGGAATCTATCGAAGTTGCAATACAGGCGGATGAGGCAGTTGATATTAATGCAAGTGATGGGCAATCTGATGATGCTACCGAGTACATATTGGACGACAATGCATCAGAACCTGCAGATTACGGTTCAATCGAAGCACTCGATGAAGTATCCGTTTGTGATGGGATAGTTCGGGTACGGCCCCGGAACGTACGagtaaatCGCCATTTTTGCGATGTATGTGGGAAAGGGTTCCCTTACCCTAGCGCACTGCGTAAGCATTCGTTGATACACAACGAGATAAAGGCGTACAGCTGTGAATTATGCGAAAAAAGTTTCGCACAAAAAGTAAACCTGGACGTTCATATGCGCCAGCATACCGGAGTGCGCCCAAAGCCTCGGTACACCTGCGAGGTGTGCGGCAGGAAGTGCTACCGGAGGAGCGAGTTCCTCAACCACCTAGGCGTGCACCACCGAAAGTATCCCATCGCGTGTCCGGGCTGCGAAACACGCTTTAGTGACGTGACCACGCTGTACACCCATCTCCACCAAGCTCACCAGAACGAGGTTTCTATGCAGCGGTGTCTCGAGATGTTCATCGAGAATGCAACGGCGCAGATTATTGTCGACAAGCAGCCGGCAGGCGACACTTTGTGCGAGGACGGTCGGTGGGAATGCTCCGTGTGTGGGAAGCGCTTTACCCTGAAGACATCCCTGACCAAACACAAGCGCAAGATTCATCCGAAGATATTCGCCTGCCCGTATTGTTGGCGGCACTATCCGTACCGTAGTATACTGGAAAAGCATTTGCCGGTGCACACGCAAGAGAAGGCGTTCCGATGTACGCACTGCAGCGCTTCGTTCACGCAACGGAGCAATCTCAACAAGCACGTGCAGTGCAAGCACAGAGTGAACACCTTGGCGGACGTCACGGAGGAGGACCTGGTGGTGGAGGATCTGGCGGATGGCAAGGGCGGAGCGTATCCGTGCTCGCGGTGTGGGAAAGCGTTCATCCGACGGGGCACATGGCTGGCGCATCTCGAGTCACATTTCACCAGAGACGACCTCACGCCCACGTGCGACCTCTGCGGACTGTCGTTTGCCTCGAAGACGTCGTTGCGGAACCATCACAATCGGCAGCACCACAGAAACCTACTGGACAGGAAGAAGGTTCTCTCGGGCGATAAGGTGCGCGCTATTTCTCGCCCATCATTTGTGGACGGGATTGTCGAGCAAGAGATCAATGATGTGGAGAGTGACCCCGAAAACTTAATGGCGGAGGACTGA
Protein Sequence: MKCSVPGCDTDENVVSYTSVFFVNIPKEPLVKEQWLNVLDVNDTELIRALLAGEAKVCSCHFTEDCFGQHPVYGYRYLLPSALPTILPHSNFEKLLREPSPPNDDDIASNCYFMYVSDASESIAIGQEALDLVANFNDINLIKTEEEEKTISAADDEEEAFEEIGIKYEDGKYYFLQLDGDLTSEANKVPSIDKVNEPHDREPWESGICTSNDFPNDDADNEVLTNEVRNGEENIEELRRENIFDGRDETVDFVEYLVETPQEIVLANIGTIESVLVNNGASSEQFVDDDEIVNEESIEVAIQADEAVDINASDGQSDDATEYILDDNASEPADYGSIEALDEVSVCDGIVRVRPRNVRVNRHFCDVCGKGFPYPSALRKHSLIHNEIKAYSCELCEKSFAQKVNLDVHMRQHTGVRPKPRYTCEVCGRKCYRRSEFLNHLGVHHRKYPIACPGCETRFSDVTTLYTHLHQAHQNEVSMQRCLEMFIENATAQIIVDKQPAGDTLCEDGRWECSVCGKRFTLKTSLTKHKRKIHPKIFACPYCWRHYPYRSILEKHLPVHTQEKAFRCTHCSASFTQRSNLNKHVQCKHRVNTLADVTEEDLVVEDLADGKGGAYPCSRCGKAFIRRGTWLAHLESHFTRDDLTPTCDLCGLSFASKTSLRNHHNRQHHRNLLDRKKVLSGDKVRAISRPSFVDGIVEQEINDVESDPENLMAED

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00105875;
90% Identity: iTF_00105875;
80% Identity: iTF_00105875;