Aplu007657.2
Basic Information
- Insect
- Anopheles plumbeus
- Gene Symbol
- -
- Assembly
- GCA_034621735.1
- Location
- JAOEFI010000006.1:15372766-15382255[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.00073 0.065 13.8 1.2 2 23 51 72 50 72 0.97 2 15 5.6e-05 0.005 17.3 1.9 1 23 78 100 78 100 0.98 3 15 1.1e-05 0.001 19.5 0.2 1 19 106 124 106 128 0.93 4 15 6.5e-07 5.8e-05 23.4 2.3 1 23 134 156 134 156 0.98 5 15 2.2e-06 0.0002 21.7 1.2 1 23 162 184 162 184 0.98 6 15 4e-07 3.6e-05 24.1 0.3 1 23 190 212 190 212 0.98 7 15 2.6e-06 0.00023 21.5 0.2 1 23 218 240 218 240 0.97 8 15 1.2e-07 1.1e-05 25.7 0.3 1 23 246 268 246 268 0.98 9 15 1.2e-06 0.00011 22.5 0.5 1 23 274 296 274 296 0.98 10 15 2.1e-06 0.00019 21.8 0.3 1 23 302 324 302 324 0.97 11 15 7.9e-07 7e-05 23.1 0.3 1 23 330 352 330 352 0.98 12 15 4.3e-07 3.8e-05 24.0 0.3 1 23 358 380 358 380 0.98 13 15 3.8e-07 3.4e-05 24.1 1.4 1 23 386 408 386 408 0.98 14 15 1.1e-06 9.8e-05 22.7 2.8 1 23 414 436 414 436 0.97 15 15 0.095 8.5 7.1 0.4 1 21 455 475 455 476 0.94
Sequence Information
- Coding Sequence
- ATGTTCTACCCGATGCAAACGACATTCGAAGATGGTGAAATCGAGCTGGGACGCACGGAAATGCTCAACCACGATCAATTGACTGACAATAAGCACTCGTTGGCCTTGTCCCTCTCCCTGGGCAATACGCTCATCAATCTCAACAAAATCAAGTGTCCACAGTGCCGGAAGcgTTTTGATACAGTGGAAGAGATGCAACAACATCGGTCGAAGCATTTGACGGAGAACAAATTTAAATGCGAAATTTGTAGTAAGGAATTTCCCAGCCATAGTTCCATGTGGAAGCACACCAAGGCTCACACTGGCGAAAGACCTTTCGTGTGTCAGATATGCAACAAGGGCTTCACTCAACTAGCCAACCTCCAACGACATGATCTCGTTCACAATGGACTAAAACCCTTCAAGTGTCCGATTTGCGAAAAGTGTTTTACCCAACAAGCAAACATGCTAAAACATCAACTACTCCATACCGGACTTAAACCATACAGATGTCCCGTGTGCCAGAAAGCATTTTCGCAACACGCAAACATGGTCAAACATCAAATGCTTCATACAGGTCTCAAGCCATACAAATGTCCTGTTTGCGAGAAGGCCTTCACTCAACAGGCCAATATGGTGAAACACCAAATGTTGCATACCGGTGTGAAGCCGTACAAATGTTCCACCTGTGGCAAGGCCTTCGCTCAGCAGGCCAATATGGCCAAACATGAGATGCTTCATACCGGTATTAAACCGTACAAATGTCCAACCTGTGGAAAAGCATTTGCGCAGCAAGCGAATATGATGAAACATCAAATGCTCCATACGGGATTAAAGCCGTACAAGTGCAGCACCTGCGATAAAGCGTTCGCTCAGCAAGCCAACATGGTCAAACACCAGATGCTGCATACCGGTTTAAAACCGTACAAATGCAATACCTGTGGCAAGGCATTCGCCCAGCAGGCCAACATGGTAAAACACGAGATGCTACATACCGGAGTAAAACCGTACAAATGTTCGGTATGCGATAAAGCCTTTGCCCAACAGGCCAACATGGTCAAACATCAGATGCTCCACAGCGGAATCAAACCATACAAATGTCCAACCTGCGACAAAGCCTTTGCCCAGCAGGCCAATATGGTGAAGCATCAGATGCTCCATACCGGAGAGAAACCGTTCAAATGCAAAAGCTGTGATAAGGCTTTCTCGCAACGTGCCAATTTAAAGAAACACGAAATGGTACATCTCGGCATTCGACCACACACCTGCCCGCTCTGCACGAAGTCCTACTCGCAGTATTCGAACCTGAAGAAGCATTTGCTCGTTCATCAGAAGCAGGCgctcaagcagcagcagcaaaacggcCAAGTGATGGTAATTCTCTATAACTGCCAAACGTGCAAGATGCAGTTCGAGGACATCATCGAGTTCGAACGCCACACAAAGCAATGTGATATCAAGCACAGCGTGAAGCTGGAAACGATCAAGAGCGAGGTCGACATCGATGGCAGCTCCAGCTCGGGCATGCAGCAGCACCTCGCCGGGGCCACCAACGGCACCAATGGCAATGCTCTCAACGTTagccagcagccgcagcagcccCCGACGCCGATGCATCTTCCGTCGGCCATCCTCACCTCCGTCATCTCGTCATCGATCGGTGCGAATGTGACCGCGCACAACCTCACACCGTCGGCCCATGCCTCGCACGTTGCTCACGTGACGGCCAACGGGGGCATTCTCTCCGGCATACCTGCGGGGCATCCGCatgcccagcagcagcacactcCGCCGGGTGTCACCCTGTCCCAGCACCTTGCCGCTCAtgcccaacagcagcagcagcagcaacagcagcaacaacagcagcagcaacaacagcagcaacaacaacaccaacaacaagctcaccagcagcagcagcaagctcaccagcagcagcagcagcagcaaccgcagcagctcTCACCAGTTGGTggtggccaccagcagcatttggtgctgcagcagcagcacaatctACCGATTCATCTTCAGCAGCAACTATCGCACCATCTGATCGCGTCGCATCTCCCGCACCATCAGGATCACTCCGGTCCCGGTGACCTGCACCATCAGGTGAACTTCCATCCGCACATCTCTCACCTGCCGAACTTATCGCACAAGATCCTATCCCCGCTGTTCCACATTCCGCcgttcaacaacaaccacagcaCATAA
- Protein Sequence
- MFYPMQTTFEDGEIELGRTEMLNHDQLTDNKHSLALSLSLGNTLINLNKIKCPQCRKRFDTVEEMQQHRSKHLTENKFKCEICSKEFPSHSSMWKHTKAHTGERPFVCQICNKGFTQLANLQRHDLVHNGLKPFKCPICEKCFTQQANMLKHQLLHTGLKPYRCPVCQKAFSQHANMVKHQMLHTGLKPYKCPVCEKAFTQQANMVKHQMLHTGVKPYKCSTCGKAFAQQANMAKHEMLHTGIKPYKCPTCGKAFAQQANMMKHQMLHTGLKPYKCSTCDKAFAQQANMVKHQMLHTGLKPYKCNTCGKAFAQQANMVKHEMLHTGVKPYKCSVCDKAFAQQANMVKHQMLHSGIKPYKCPTCDKAFAQQANMVKHQMLHTGEKPFKCKSCDKAFSQRANLKKHEMVHLGIRPHTCPLCTKSYSQYSNLKKHLLVHQKQALKQQQQNGQVMVILYNCQTCKMQFEDIIEFERHTKQCDIKHSVKLETIKSEVDIDGSSSSGMQQHLAGATNGTNGNALNVSQQPQQPPTPMHLPSAILTSVISSSIGANVTAHNLTPSAHASHVAHVTANGGILSGIPAGHPHAQQQHTPPGVTLSQHLAAHAQQQQQQQQQQQQQQQQQQQQQHQQQAHQQQQQAHQQQQQQQPQQLSPVGGGHQQHLVLQQQHNLPIHLQQQLSHHLIASHLPHHQDHSGPGDLHHQVNFHPHISHLPNLSHKILSPLFHIPPFNNNHST
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00103817;
- 90% Identity
- -
- 80% Identity
- -