Amin008760.1
Basic Information
- Insect
- Anopheles minimus
- Gene Symbol
- -
- Assembly
- GCA_000349025.1
- Location
- KB664054.1:5122350-5123904[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 8 2.7 1.5e+02 2.6 0.1 2 12 57 67 56 73 0.78 2 8 1.6 90 3.4 0.1 6 23 157 174 155 174 0.83 3 8 6.6e-06 0.00037 20.3 1.0 1 23 180 203 180 203 0.96 4 8 0.00016 0.0091 16.0 3.0 2 23 210 231 209 232 0.95 5 8 0.00017 0.0097 15.9 4.4 1 23 238 261 238 261 0.94 6 8 0.00067 0.038 14.0 0.9 1 23 267 289 267 289 0.98 7 8 0.00035 0.02 14.9 4.6 1 23 295 317 295 317 0.98 8 8 9.8e-06 0.00055 19.8 1.2 1 23 322 345 322 345 0.97
Sequence Information
- Coding Sequence
- ATGGATTCTCGCGAATGCACATTTTCGATCGTGTGCAGATTTTGTCTCTGCCAGGAACGGGAGAAACTGATGCCATTCTCGATGTTGATCGACAATGTACTTACTGCGCAGGATATACAGCTATTGACCGGTATAGAGaatCTGGAAGATAACACTGCCCCGTACGTGGTGTGTGACGATTGTGACGAAACGTTGAACAAGTTTGTAAGCTTTCGTGACACCTGCTCGAagaatgatattattttttggcaAATCTGCACAGAGCTGAGCGTAGATGGAACGATCGAAGTAACCCAGGAAGATGCGGTTCACGATAAAGCAGAAGAGCAACCATATAGCATTTTATTTGACGCCAATGAATGTGTAGTGGAACAGAACGAAACTACAGCTGAAGTACgcccacaaacaaaaagaaggagaaaaaaattaacaaatggCATCGCTGGTGAAGAATCCGGCAAAAAGCTTTGTGATATGTGTGGTGCCTTCGTCTCGGAACTTGGTGCACATCGGCGGGTACACACGAAGGAAACCCCGTACACCTGTACGTATTGTGGTATCAGTATGACGCACAATTCCAACTTACTGCGCCATATCGATTCCGTGCACTTGAAGCGCATCATTAAACGATGCGAAGTGTGCAACAAGGGTTTTACTAGCTATTTTTCCTACGGTTCACACATGCGTTCCCATCACTCAACCGAGAAGAAATACGAATGTAAAacgtgcaacaaaaaatttaaccaTCATAGCAGTCTATGGCTACACAACATACGGGCACACAacgatgaaagaaaattcaaatgtaCCGCGTGTGGTCTGTCGTGGAAAACGAAgGAATCACTCAAAACACACGAACGGTCACACTCGTCGGAACGACCGTTCTCCTGTCAGCATTGCTCAAAACAGTTCAAAACGCGGTACGGCTGGAAATCACATGAGCTAACGCACACGGGCATCATATTTAGCTGCCAATACTGCGACAAAACCTACCGGTACAAAACCCTCATTAATGCCCATATTCGAAACGCCCACCCGGACGAGGTTCTCGAAGCAACGAATTAA
- Protein Sequence
- MDSRECTFSIVCRFCLCQEREKLMPFSMLIDNVLTAQDIQLLTGIENLEDNTAPYVVCDDCDETLNKFVSFRDTCSKNDIIFWQICTELSVDGTIEVTQEDAVHDKAEEQPYSILFDANECVVEQNETTAEVRPQTKRRRKKLTNGIAGEESGKKLCDMCGAFVSELGAHRRVHTKETPYTCTYCGISMTHNSNLLRHIDSVHLKRIIKRCEVCNKGFTSYFSYGSHMRSHHSTEKKYECKTCNKKFNHHSSLWLHNIRAHNDERKFKCTACGLSWKTKESLKTHERSHSSERPFSCQHCSKQFKTRYGWKSHELTHTGIIFSCQYCDKTYRYKTLINAHIRNAHPDEVLEATN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00098020;
- 90% Identity
- -
- 80% Identity
- -