Amin002379.1
Basic Information
- Insect
- Anopheles minimus
- Gene Symbol
- -
- Assembly
- GCA_000349025.1
- Location
- KB664255.1:1179342-1182096[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 6.7e-05 0.0038 17.2 1.1 1 23 70 92 70 92 0.97 2 12 0.00013 0.0074 16.2 0.5 3 23 100 120 99 120 0.98 3 12 5.4e-06 0.0003 20.6 0.7 1 23 126 148 126 148 0.96 4 12 0.56 32 4.8 0.6 1 21 154 174 154 175 0.92 5 12 0.0031 0.17 11.9 1.7 1 23 412 435 412 435 0.96 6 12 1.7e-05 0.00094 19.1 3.9 1 23 459 481 459 481 0.98 7 12 4e-05 0.0023 17.9 0.9 2 23 517 539 516 539 0.95 8 12 0.0032 0.18 11.9 0.1 1 21 549 569 549 570 0.94 9 12 1.4e-05 0.00078 19.3 1.3 1 23 578 600 578 600 0.98 10 12 0.0018 0.1 12.7 4.3 1 21 606 626 606 628 0.94 11 12 0.00025 0.014 15.4 3.9 1 23 634 656 634 656 0.98 12 12 0.0028 0.16 12.1 3.9 3 23 664 684 662 685 0.95
Sequence Information
- Coding Sequence
- ATGTCTACCAGGAAGGAAAGCACAGAATCACAGAATCAGAACAGTTTACCGTGTCCCGACTGCAACGGACAACTGGTTCTCCAAAAGGATCCCAACGACAACGATGAGAAAGAGAAGGATCATACATTTTTCACCTGCAACTCCTGTGGAATGCGCTTGGAAATACAcgTGGAAGATGATTTACCAAAGAATGGCACTGAGAAACGATTTCAGTGTGATATCTGCCATCGATTCTATGCGACACCAGTAACGCTCAAAGTGCACCGTTTACTGCACACAACCGGTAAGACCGAGCTGTGCGATTTTTGTGGCGCCAGTTTTCAAACTCGCGgtcaattaaaaatacacaaacgtGTTCATACGGGTGAAAAACCTTACAAATGTAATGAATGTGATAAATCTTTTCCATACAGAGAGAGCCTTATAACGCACTCCACCGTACATACACGCATCAAACCGTACCTGTGCGTTGTGTGCAATGCGCGATTTTCTTGCATTGGCAATCTTCTGAAGCACCGCCGATTACGTCCGACCAAGTGTGGTTTGAACAGCATTCCTACCAGATATATTGGGCCTCGTCCGAATAAAAAGACAATGCCAAGCTTAACAGACCGACGAGACAACGAAGCGAAACCCAAAAAGCGTCTGAAAATATCAGATCCAAGCGAAACAACTGACCCGATAAATGTATTGGAATCAAACGAGACCAAGAAAGCGGTTCCTAATGAAGTGAATGCAATTTCTAAGCACGATATCGCAAATGCTGATATTTCTGCAGTTTTAAATgctgaaaaaatattaatagaAGACGAGCAGTGTTTTCCAGAGGACGATGAAGCCATTGATTACgaccatttgtttgttgatgaacaagaacaaaatcaAtctgaaaatggaataaaaaatattgaaaatactAATGGAGAAGCGAGCACCACACCTAACCCTAATAAGCATCGAAACAGTACAACACCGGAAAGGGAAAATTCTGCCGACACATTTTCCGAATATGATGAGAAAGAATCGTGGGAATATGTAAATGTTGAACCTGATCAGTCGAGCGATACATCTGCACCAGCGAAAACACGTCCCAGGAGCAACAGAAGCCGAAAGAAGACAAAATCTCTCGATTCTCTAGCAACGCTATTAGACAAACCGGATGAAGAgTCAATCCAGCAGGAACATGAACAGTTAAAgTTATTGCATGATCTTTCGGAACCAGTAGACGAGTACCACCGATGCAAGCTTTGTCCGCAACAGTACACCACGCTTTACCTGATGGCACGGCATTTGGAACGACTGCACAGCGTAAAGCTGGATCTAGCGCGGAATAAACTGCAGTATataaaaaacaccaccaaacatGAAAGTCGATACCGTTGCAAGTACTGTGATCAGACGTATGTGAATCCAACCTGTTTGCAGAAGCACCTACTTAAACATGGTCCGCATGGGTGTTTGAGGTGTAAATGTTCCTGCTGTGATAAGTATTTCATGACGCAGGATGAGACATACCTACACGAACTGGATCAGCATCGCGATCGGTTGGAATGTAAGGTTTGTCAGAAGTTGTTCAAAAAACCCGACCAACTTCTACGCCACACACGGTACGAGCACAGCTCCAATGGGAAAGACCGCACCAAGTACATCTGCACACAATGTTCGAAGaatttcccttccaaaatTGCACTATCCGATCACGAACGAGCGATATGTGGGAAATCTCCTATTTATCCGTGTGGCAAATGCGACAAGCGATATTCCAGCTTCAGCTCACTGAAGATGCACCAAACGGTGCACGAAAACAAACTCCCGTTTGTGTGTAGTTTCTGTGGGAAGCGGTTTCGCACAAAGGGCCAGCAAAAGGTGCATGAACGGTGCCATACGGGTGAGAAACCGTTCCGGTGTGACAAATGTACGTGTGCCTTTTCGTACCGGGAGTCACTGATGACGCATCTTAGCACGCACACGGGTGTAATGCGTTACGGATGTACGGATTGCGATCGACGATTTTCCTGCATCACCAATTTGCAGGCGCACAGACGGGTACATCACAAAGCAATAGCTACTGATACGACTCTTCCAAACCCGGATAACATTAGTGGTCATATTAGCGGTAGCGGAGATTAA
- Protein Sequence
- MSTRKESTESQNQNSLPCPDCNGQLVLQKDPNDNDEKEKDHTFFTCNSCGMRLEIHVEDDLPKNGTEKRFQCDICHRFYATPVTLKVHRLLHTTGKTELCDFCGASFQTRGQLKIHKRVHTGEKPYKCNECDKSFPYRESLITHSTVHTRIKPYLCVVCNARFSCIGNLLKHRRLRPTKCGLNSIPTRYIGPRPNKKTMPSLTDRRDNEAKPKKRLKISDPSETTDPINVLESNETKKAVPNEVNAISKHDIANADISAVLNAEKILIEDEQCFPEDDEAIDYDHLFVDEQEQNQSENGIKNIENTNGEASTTPNPNKHRNSTTPERENSADTFSEYDEKESWEYVNVEPDQSSDTSAPAKTRPRSNRSRKKTKSLDSLATLLDKPDEESIQQEHEQLKLLHDLSEPVDEYHRCKLCPQQYTTLYLMARHLERLHSVKLDLARNKLQYIKNTTKHESRYRCKYCDQTYVNPTCLQKHLLKHGPHGCLRCKCSCCDKYFMTQDETYLHELDQHRDRLECKVCQKLFKKPDQLLRHTRYEHSSNGKDRTKYICTQCSKNFPSKIALSDHERAICGKSPIYPCGKCDKRYSSFSSLKMHQTVHENKLPFVCSFCGKRFRTKGQQKVHERCHTGEKPFRCDKCTCAFSYRESLMTHLSTHTGVMRYGCTDCDRRFSCITNLQAHRRVHHKAIATDTTLPNPDNISGHISGSGD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -