Amin003782.1
Basic Information
- Insect
- Anopheles minimus
- Gene Symbol
- -
- Assembly
- GCA_000349025.1
- Location
- KB663943.1:13412333-13414241[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.1 5.6 7.2 0.9 2 23 234 252 234 252 0.87 2 11 0.00058 0.033 14.2 0.6 1 23 258 281 258 281 0.95 3 11 0.00045 0.025 14.6 0.3 2 23 288 310 287 310 0.96 4 11 0.0002 0.011 15.7 3.3 1 23 315 338 315 338 0.98 5 11 5.1 2.9e+02 1.8 0.1 6 23 351 368 349 368 0.81 6 11 0.0011 0.061 13.4 0.5 1 23 374 397 374 397 0.96 7 11 0.0053 0.3 11.2 1.2 2 23 404 426 403 426 0.96 8 11 1.6e-05 0.00092 19.1 2.0 1 23 432 455 432 455 0.95 9 11 4.8e-07 2.7e-05 23.9 0.2 1 23 461 483 461 483 0.98 10 11 0.00024 0.013 15.4 3.5 1 23 489 511 489 511 0.98 11 11 1.8e-05 0.001 18.9 1.2 1 23 516 539 516 539 0.97
Sequence Information
- Coding Sequence
- ATGGCGAGCAATATGTGCGAAATTAATACCATTTGCCGGCTTTGCTTGTGCGACGATAAtgaagttttgtttcccatGTCCTGCATAATAGAATCGTCATTAACCGAAGAGGATATTGAGCGATTTACCGGCATCGAGTTGTTTGGAGAGGAAAATTTATCCTACACGGTTTGTGTCGATTGTGCTAATAAGCTAAAAAAGTGCGCCTTGTTTCGCACACTATGTTTAAGCAATGATGCGCAATTTAAACGGCTATTCGCGGCGGGTATTAAGAGCGATGGGAAGAAATGCACAGGCACGGAAAATGACACCGCAATTGCGGAAAGTTCGGTAGAACAGCCCGAATCTACAATAGAGTTTGAGATAGTCGAtatgaaaaacattcacaaaatgGATGAATCGGTAACAGAGGGAAGTGACAAAGAATCCAATGTGGAGTATGTACTAGGAGAACCGCCGGATGATGAGTGCAACGCTAGCGGTGACGAATGGGTTAATGGATTGGAGAACAAATGTGAACAGCGTATCGATATACTTCCAGAGAGTGTGGTATTGAACCACCTAGAACATGATGAGCTGAAAGACGAAGCTACAATAACCACAGgccaaaaagaacaaaatgaaagcgGGTCTCCACGTAAAAGCAAAACCCGCTTGAATGCGAAAACGACGACATCGAGTACAATTCGAAAGTATCGGCGTTGCGATACCTGCGGGAAGATGGTATCGGATCTGAAAAGCCATCAGCTAAGGCatacgaaggaaaagaaattcgCTTGCCCTTACTGTCCCCATAAAATGAGTTTCCGATCCAACTTAAACATACACATCAAGGCTGTTCATCTGAAggaaatttgcaaaacgtGTGAAATGTGTGGAGTAGGGTTCGTTAACTACAACTCCTACAAGAACCATATGGCCTCTCAGCACGGAACGGGCGCATACGAGTGTGAAATTTGTTCGAAGAAGTTTACGCACATAAGAACTTACAATATCCACGTACGGCGTTACCATCAAACGGagcgaataagaaaaaaaccgaagcaaCTTTGCGGCACTTGTGGCGCTCTGGTGACAAACATCGCTACGCACATGCAAACTCAcacgcaagaaaaaaagtatccCTGTCCACATTGTCCGATCGAAATGGTAGATCGTACAAACTTGACACGCCACGTACATTCGGTGCATTTGCAGAGGGAGGTTAAAAGTTGTGACATTTGCAACATAGGGTTTAAGTATCCGAGCTCTCACAGATCTCACATGCTCCGAGTCCACGGAATCGGCAACACGTTCGATTGTAATGAATGTTCAAAAAAGTTCAACCATCGAAGCGGATTGCAAAGCCATTTGGCACGTGTGCACAGTAGTGAAAAGAAATACCAATGTGACACGTGTGGCAAACCGTTTAAGGTGAAAGCGAGTCTGGTAAAGCATCAGCTGGTTCACTCAACCGAACAACCATACGCGTGCAATCAATGTCCAAAGCGATTTAAGAGCAGACATGGTCGAAATTCACATCAGCTGACACACAGTGGGGTTGTTTTCCCTTGTCCACACTGTGAAAAGTCCTATCGGTACAAAGACGTGCTTAGTATTCACATCCGACAAAATCATCCGGAAACGAAGACGGTCAATGTGTAG
- Protein Sequence
- MASNMCEINTICRLCLCDDNEVLFPMSCIIESSLTEEDIERFTGIELFGEENLSYTVCVDCANKLKKCALFRTLCLSNDAQFKRLFAAGIKSDGKKCTGTENDTAIAESSVEQPESTIEFEIVDMKNIHKMDESVTEGSDKESNVEYVLGEPPDDECNASGDEWVNGLENKCEQRIDILPESVVLNHLEHDELKDEATITTGQKEQNESGSPRKSKTRLNAKTTTSSTIRKYRRCDTCGKMVSDLKSHQLRHTKEKKFACPYCPHKMSFRSNLNIHIKAVHLKEICKTCEMCGVGFVNYNSYKNHMASQHGTGAYECEICSKKFTHIRTYNIHVRRYHQTERIRKKPKQLCGTCGALVTNIATHMQTHTQEKKYPCPHCPIEMVDRTNLTRHVHSVHLQREVKSCDICNIGFKYPSSHRSHMLRVHGIGNTFDCNECSKKFNHRSGLQSHLARVHSSEKKYQCDTCGKPFKVKASLVKHQLVHSTEQPYACNQCPKRFKSRHGRNSHQLTHSGVVFPCPHCEKSYRYKDVLSIHIRQNHPETKTVNV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00097959;
- 90% Identity
- -
- 80% Identity
- -