Basic Information

Gene Symbol
lov
Assembly
GCA_000349025.1
Location
KB663755.1:854065-886675[+]

Transcription Factor Domain

TF Family
HTH
Domain
HTH_psq domain
PFAM
PF05225
TF Group
Helix-turn-helix
Description
This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 1 1.9e-18 3.6e-15 54.9 0.0 1 44 792 835 792 836 0.96

Sequence Information

Coding Sequence
ATGAAGGAATCATTCGAAATCATGCCTGATCAAGAACACTACAGCCTTCGGTGGAACAATCACCAAAATCATATACTGCGTGCATTTGACACGTTACTGCAGACCAAGACGCTCGTCGATGTGACGCTGGTGTGTGCCGAAACTAGCATCCGAGCGCATAAGGTAGTGTTGTCCGCTTGCTCTCCGTTCTTTCAGCGCGTATTCTCTGAAACACCCTGCAAACATCCCGTGATCGTGCTGAAGGACTTCCGCGGATGGGTCGTACAGGCGATCGTGGATTTTATGTACCGTGGTGAAATTAGTGTTCCACAGGAACGGCTTTCGGTACTAATACAGGCCGGTGAATCGTTGCAGGTGCGAGGGTTAGTAGACCATCCGGTAGCAGCAAATACCCCAACTCCGGCCCAGTCGCCGGAAGACTTTAGCCTGTTGGATAGCTCACTTATATCGCCCACGTCGCCCTCGTTACCCTCGCCAAACTTTCAAACCAATCACCAATCGGGACAGCTCCGACACCATAACGCGACAGCGACCAGTCTGATATCGTCCAACACGCCGAAACTGTTGCTACCGCCGCAAGTGTTTGCCGATCCGTCGATCAGTCTCCCCAGTGCTAACGTCGACCCGTGCACCTCCCCAATGCCTCGCCGCAAACAGGCACGCCCGCGAAGACGCTCGGGGGACTGTGCCCCGCAGGACCTGAGCAGCAAGCCTTCAACGCCTGTCCCGCAGGCACTGGAAGACGACGAAACCGAACGGGATCTGCTCGACGATCGTCCGGACGATGAAGATGAGTTAGAAGAATtggaggatgacgatgatgacgatgatctGAAGCGCATCTTGCAACGAAGCCAATCAGTCGATGAAAAACTGGCGGCACTGGTAGCAAAGGAAGATTTACGAACACAATCTTCCAGCGACTTGACAACAACACCGACGataacgacgacgacgacggcgacgacgactAACACCGATGAAAGGCGATCGCGCTCGTTACACAAATTAAGCCCTCGCAAAACGTCATCTTCGAAGAGTGGCAGTGTGGGACTGCTAAAGAGAGACGATCTCAACACAGATACGACGCCAGCATTGTCCGAATCACCTCCAGTGTCTGATGGACCAGAAAATCTGTGCATGAAAAAATCTTCCTCCAGTAGTTCTGAGCTAATTAGAAACATTGCGATCGGAGGTAGTGAGCAGCATAACCGAATAGCGTCGATCGAAGCGTCGGACAATAATAGCGCCAGTaccgaaacgaacgatcgGACCGCCAGTCGAGATGGCGCCACCCGCTTGCCTGATGGTAGCAAGGATTCCTCACCACTCTCAGACACCGTCGGCGGACACATGGGCAGTCGGGGACTTCTTTCGCTAAAGGATATTCGGCACCTTAACCGTGCGGCGTTGAATCGCTCTCTCGGATCCATCTCACCTCCGCCCTCGTTCTCGTCGCTGAACAACAATCTGCATCCAGCATTGAGCCTAatgcatcaccaccatcatcatcaccatcatcatgcagACGCGAAGCGTGTGAAGCTCGAAGATCGTGAGGATGATCGTTCGCTACTGCACGACGATCTGATGGAACCGCCGCACTTTTTGGACCACATGGATCTGGCACTGAGTACACATCAACATCCGCTGGCACACCATCTAGCCCATCAGCACCATCTACGCAACTCTTCTCCCCATTTGCGACCTCCAACGGCTGACGGTGGCGGCACGGACAATAATGGCAGTAACAgtagcaacaaacaaaataatagcGGTAACTccagcaataataataacggtAGCGCTGGCGCTAACAATCACAGCAGTATCCTGAACCAGCATCATAGCAATCCGAATAACAAGCACCATCACCAGGCGGGTGGTGGAGGCAGACCAGGAACACCCAAGCATACATCCGGCATCggaaatagcaacaacaacaacggtggCAGCAACagtaccagcagcaacaacagtctACACCATGGTCATCATCCGCACCATCATCCACACAATGGTCCGAAAGGATCTGCTGGAGGGCCGAAAGATTTTCTACACAGTCCCACCCTAAACTTTCCACCCTTCTTCAACCACTCGGAAGGACCGCCGAGGCCGACTCACTCGCCTCTTTCCTTCCCACACATGCCGTCGGTTTCTTCCCTAACACTTACTCCGCCTCACATGTTCGGGCTCGATTCGCCGTTAGGACTTTTTCCGCCAGGAATGGATCCAGGGAAAATATACAGCCCCCTAATGGAAATGTCGGACCCACGGAGTATGCACCACGATGGACCACCGTtcctgaagaagaaaaTGAACCGACCGAAAGGACAACATTCTGCACCACGAGGAGGACCGCCCCGGTCGTGGACCAACGCAGAGCTTACCGAGGCGCTGCAGCACGTGTGGAACAAGAAAATGACGACGAGTCAGGCATCCCGCATTTTCGGCATTCCGTACAACTCGCTGCTAATGTACGTGAGGGGCAAGTACGGCAAGAGTCTCAAGCTGGAGCAGCTCCGGAAGGACTGCATCAGTGGGCCACCGATCGAGCTGCTGCAGATGGGCGTGGGTAACAGCAACAAGGACAAGAAGGAAGGCAAAGATTCGGATCTGCACCACAGTCATCATTCGGGCAGCGGCACGGGACGGGAAGGAAACAGTGGACCGAACGGTGGAagcggtggcggtggtccCGGCAATGGTGGTGGAGGTCCTCGATCGGCCTCATCCGAACCGGAGCTCTTGTCCAGTCCGAACCCACTGTTCAACCCATTCCCCGGCGGCTTCTATCCTGACTTTCCCGGCGGATTTCCGGGGCTGCCGCTGAGCATGCTGAACCTCCTGCCACCGGAACGACACCCACCGCACACGCTGCCGATGTCCGTCGACGAGGACTGCAAAAGCGATCGGTCGAAACAATCGCTGGACGATGATTTTCCGCAACCGTTAGCACTTAATCGACCTTCGTCGGAGCAGCTGTCGGACAGCCGGCGGGAGATATACCAGCAGAACGGGCAGGACTAA
Protein Sequence
MKESFEIMPDQEHYSLRWNNHQNHILRAFDTLLQTKTLVDVTLVCAETSIRAHKVVLSACSPFFQRVFSETPCKHPVIVLKDFRGWVVQAIVDFMYRGEISVPQERLSVLIQAGESLQVRGLVDHPVAANTPTPAQSPEDFSLLDSSLISPTSPSLPSPNFQTNHQSGQLRHHNATATSLISSNTPKLLLPPQVFADPSISLPSANVDPCTSPMPRRKQARPRRRSGDCAPQDLSSKPSTPVPQALEDDETERDLLDDRPDDEDELEELEDDDDDDDLKRILQRSQSVDEKLAALVAKEDLRTQSSSDLTTTPTITTTTTATTTNTDERRSRSLHKLSPRKTSSSKSGSVGLLKRDDLNTDTTPALSESPPVSDGPENLCMKKSSSSSSELIRNIAIGGSEQHNRIASIEASDNNSASTETNDRTASRDGATRLPDGSKDSSPLSDTVGGHMGSRGLLSLKDIRHLNRAALNRSLGSISPPPSFSSLNNNLHPALSLMHHHHHHHHHHADAKRVKLEDREDDRSLLHDDLMEPPHFLDHMDLALSTHQHPLAHHLAHQHHLRNSSPHLRPPTADGGGTDNNGSNSSNKQNNSGNSSNNNNGSAGANNHSSILNQHHSNPNNKHHHQAGGGGRPGTPKHTSGIGNSNNNNGGSNSTSSNNSLHHGHHPHHHPHNGPKGSAGGPKDFLHSPTLNFPPFFNHSEGPPRPTHSPLSFPHMPSVSSLTLTPPHMFGLDSPLGLFPPGMDPGKIYSPLMEMSDPRSMHHDGPPFLKKKMNRPKGQHSAPRGGPPRSWTNAELTEALQHVWNKKMTTSQASRIFGIPYNSLLMYVRGKYGKSLKLEQLRKDCISGPPIELLQMGVGNSNKDKKEGKDSDLHHSHHSGSGTGREGNSGPNGGSGGGGPGNGGGGPRSASSEPELLSSPNPLFNPFPGGFYPDFPGGFPGLPLSMLNLLPPERHPPHTLPMSVDEDCKSDRSKQSLDDDFPQPLALNRPSSEQLSDSRREIYQQNGQD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00107077;
90% Identity
iTF_00103771;
80% Identity
iTF_00105237;