Basic Information

Gene Symbol
JARID2
Assembly
GCA_000349025.1
Location
KB663721.1:7120356-7130712[+]

Transcription Factor Domain

TF Family
ARID
Domain
ARID domain
PFAM
PF01388
TF Group
Helix-turn-helix
Description
This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 1 7.5e-22 1.4e-18 66.6 0.0 6 89 1874 1955 1869 1955 0.93

Sequence Information

Coding Sequence
ATGGTCGTTTCGAAGGAAGGTAAACGCCGGCGTAAAGTGTCCGCCATCGCGCAAGCCGGTGGCGGCAGCACCAATCCATCTTCCGGCAGCGGGTCTAACGGCCCTATCACTAGTGTAGCAGCAGAACGTGATCTTTCTCCACCGGAAATTCCGAAGCGCCCGAAAGTGCACGCACAGCGGAAATTCGCTCAAGGGCAGGGAACGGCATCTTCGTCTTACCTCAGTTATTCTTCTGCACCTCCAACACCCGGTAAAGATGGTCAGAACCGGGCATCACATTCTGGGACGGGGAATGGCACAACACCGAGCGTTCCTGGCAGTGGGAGCGGCGCGGAAGCTAGTCCACAAGTACCAGAACTGTTACCGAACATGCGACCAAATACGGAAGATTTCCTTACATTCCTGTGTTTTCGTGGAACACCGGTATTGCCACCGGCGTtggattttttcaataaatccAACTCCGGTGCCAGCGCTACAAATGCGGGAAACAGTAGCAGCGGTGGGAGACAATCTTCCACACCGGGTGGCTCGGGAAGTTCCAAGCTAAAGtcgcaacaaacgaaaatagCTGCATCGACGAGCGTAACACCAGGCCCACCTGCGATGCCCTCTTCCACTTCCGCTAAGGCAAccgatgcaaaacaaacgcatgaAAAGCAGGACAACGCAAATTCGAATAAATCCGTGCAACATGAACCGGTTAgtcaggaaaaacaaatcactccTACCCCAGCGACAACAGCACCCGCTGCTACATACATCCCTTTTGCTGTACGCAAACGTGCAGAGCAACATCCGGTACCCGCAGAGACACGATCCGACCGTAAGCGCACGCAAGATAAAATGCAGGCACTACGCAAAAAGTATCACGATCAGCGAGTCGCTAAACTGCGAGCAACGACACAGGGTCAGCGACAGAGTGGTCGTGGCAGCGTTTCTATAGCAACCCGTTCTTCAAGTGTTCCTTCGAAACCAGCCCGAGAAGAGCAGgatgatgaagaggaaaatGGTTCAGAGAATGAAGCGGATGAAGTCGAAGCAGAGGACGAAggaagggaagagaaaaagcaaGATAAAAAAGTTTCCACGGATGAACCAAGCGttggcaaacgaaaaagtGGCCTACGAAGCGGAGCAACATCACACACCTCGAGTCCAGCCGTTGAAAGTGCCAAAGGGTCGCCCATAAAAATTGCTCGTAATGCAAAGCGTGATTCTGCGAAGGCTACAGCCGTTGTACAAGaagaaacaagcaaagaaTCGCCGGCTAAGACAGTCGAAAGTAAAACCCCCAACAAACCGGGTAAAAGTTCGCCACCGACGAATACGCCTGTCGAAGAATCTTCTAAACCGAGTGCTACTCGCTCTGCAAACACCGTTTCTAAAAAGTCCGTCAAAGAAAGTCCGAAGAATTCACCCGCACAGCACCAAAAGCCTACGACGACGGTTTCCGATGTGGAAGGCAATGAGAAACGGACGACAAGGTTGTCCGCCTTGCGGAATCCCCCACCCGTAGCGGCCAAATCGGAGACGCCTAAAAGTGCGAAAGATAAACGGAAGCAGACGGACCGGCCGGTTGATTTTTCTTCCGACGATGACGAACCGCTATCGCGTGCTACTGGGACGGAGAAACGTTCGTCAGAGGCGGTGACCGCGAACGAGCTTGGTAAAACGACGCGTTCCGGTAGAAGTCGGAAATCGGAACCAGCAAATCTTGACAAGGATGCGGACGAAATGCCGGATAAAAAGACACGCCGCTCCGAGTCGGTCGTGAGTCGTCGTTCGGACATAAGCTCGAGAAAGTCCGAGATGCGTGAGATAGGTGTGACAAAAAAAGTGGAAGAGGTTGCTccgaaacagcagcaacagcgtgGACGAAAACGGAAAGAACCGACCCAACCACAACAGGTCGCAAAGTCGTCCAAAGAAGATGAATCCAACAACGATGTGAAGAATGAACTGCTCTCTACGGAGAGTGTGGAACAAGCAGACCGTAAGCAGCCGGCTACaagtggaagaaagaaacgagAAACACCTGCAATCGATGCAGCACGAGACGGCACACTAACGCCAGAAGtggaggaaaagaaaccgaaaacggCCTCATCGACGCCGGTGGAATCGTTAAGTACGTCGCGCCCATcgcgcaaaacaaaagaagcgGCTACCTTGTATATGGAACTGATTGGAAGGAAGCTAAATCACGACGACCAGTCGGACGATGATGCATCGTCGCTGGATAGTCTCGAGTTGCCCAACGTGCGCAAGCTAGAACGGATGGAGAATGAGCTAAAGGCGAACGCTAGTAAGACAAGGGACGCAAAGCAGCAAGCAGCTGGTGGAGGGAGTGCTAAGGCTGGCGgtaaagcgaaaaagaaggcaaacgaaacaaaattagcAACCAATTCGTTGGACGACACAGACAAACAGCAACCGGCCGATGGTGATGACACtaaaatagtagaaaaaaGCTTTAGTGATTCTGACGAGGAACCGTTGGCTAGTAAATTTCAGCGCAAGCAGCAACAGACACGTCGTCAgccagcaaaagcaaaaggaaccGCCGCGAAGGTGCCCGTTGGACGTAGGAATGCAAAGAAAGTGAACGTTCCGGATGAGGCTGAATCAGGTGACGAACAAACATCACCCGAAAAGAACGAAAGCCCACAGAAACCATCCAAAAGCGATGAAACGGcaccaaaaaagggaacggtAACAACGCCAATGGCAGTAACCAGTACCGCCATTAGTCCCTCCGCGGGTAcagccaaacaaaatggtacatTGGGTGGTAATATCCCTGCTGGGAGTGTAATGAGAACTCCCACGAAAAGTGCACTCAATAGTCCAGTGGAATCTCCGGTCCTCTCTTCGGACCACCTGAAAAGTCCAACCACATCCGAGGGACAGAATATGTCCCGGTTAAACAAATCCATGGACAACACCCAGCTGTCCACGACAGTCGAACCGGCCGAAAGCCCGATAAAGATACCGCAAATGTTGAACATACCGACGGTCATACCATCGCAAACGCCATCCTTCCTGCAGGTAACCTCTCCAACGCACCAGCAGGCACCATTTACCCGTGCCATCAAACCGACGCTTGGAACAGCTCCCGGTACGGCGGCGAATAATGTTTCGACCGATGGTTATTTGTCTTTGAATAAGTCACCCACGGGGACAGCGATACACACGTCCCAACCGGACACCAACAATATGCCTTTCAATCGATCCGGTACGGTGACGATCGCTACTGGAGCGGGTGCGACAGGTACTCCCAAAGCCGATTTTACGCTACCACTGGATGAGTCCAATTTCATGAAAGGTTTCGAAAAATGCTCGTCAACTGATCCGAATGCGGCGGATAAACCAGGTGCGGCACATTCCTCCCTGCTGGGTAACTTACTTCCAAGCAAGGAGGAATCGGAAAAGATCTTTGGTATAGCGAGCGTTAGTTTGGCACAAAGTTCCGGCCCGCTCGATACGAAGTGTACGCTTGGGAAGTGTGGATCCGTACACAAACCACCGCTAGGACCACCCGTGCTAACGGAATCGTTGCTCGGAGGGAATCTTTCTCCACGCGATCGCCGTAAAGCAAAAGTCAACATGACGCATGAGCAGATCCAGAAGTGGATTTACGAATCATCCTGGTCACCGATCGAGGACGATCTGAAAGATGACGATTTGGAGGTGGTTGAACCGGGCACTCGtacaccaccgccaccatcgtCGTCTGCATCTGCGACGCAGCTCACAGCCACTACTCAACCCTCATCAGTAGCTACTGGTTCCGGATGGGCTGGAATGATGGCTTCCACCTCAACGCCGCTCAGTACGCCCACTGTTGGAAATGGACGTGGTAAGGAGGAACCCGATCGTACACAGGCGGTGAGCAGCGGTCCAGTGTCCACAACGATGTCCACAGtagtggagaaaaaggaaaccgcATCACAATCGACACAAAAAGAACCTGCCGTTCCAATGGCACAAGAGATAAAACCGGTAAGCAGTGATAAAGATTGtacaacaccagcaaaaacTCGTGGCGAGGGACAACCGGCAAAGGAAGTGTCCGGTGTTGCAACACCCACCAGTAGCAAGCAGCGCGATGTAAAGGAACAACGAAAATCGAAAGCAGAAACACCGACAGCACCAGCTACGTCGACACCACGCACCACAGCCACAACACCCACAACATCGGCTGACCGGAAGCCAATCTATCGGAATGCGACGGGTCGAACACCGGTCTACAAGCAAGAGGCACTCACTGTCAAACAAACACCCGCCACACAAACGACACCAAGCAgtcaccaacacacaccgtCAATGTCAACCTCCACGAAACAGATTGCCACGGGTGGTGCACCCGGATCGTCATCCACGCAGAGCAACAAGTTTGGCGCCTTTTCTCCTGTAAACGAACCGAGCGTTTATTCGTTCGATAAGGAGGAAGATTTTATGCCTGTGGCGACACCCTTCCGCAGACAGCATGGTGCGGCCAGTGGTGGAAGTGGACGGCGGGAGTCATGCAATTCATCCGCACGGGATGAACCCACCATCGGGGGAAGTAATAAGCGCGATACCACGCCAGTTGCCGACGAAAAGAACGCATTCCAGAAACCCCCGGTAGTGGCGAAAGCAAGCAATGTGGCTAACGTGGTGGTCAATTCCGATGAGAAGATAAAACCCACGGAACCATCCGTTGAGGATGGAAATGTTACtgagaaaaaggaagagacCGCCGTTAAGCAGGAAGCAAGTGATACAGAGGCGGATGGGGGTGGTGGACAAACGTTTTACATTCCACTGCAAGGCCCTACAGCTGGCGGAGGTACGGGTGGTGGTAGTTCCACAGGAAAATCGGCTGACCAACTCATCCAGGGTGTGGCGGTGAAGCTGGGAACGGAAGGTCCCGACGGTCCAAACCAACGTGTCATAATGCATGCGAAGCTCGTTACGAAGGCAGAGATGGGCTCGAATCCAACCACTCTGCCCGACTCGATGAACGTGCAGGAGCTGGTAAAGAGTCTGACGGCACAGGGTGGTGCAGCTGCCGCTCTGGGCAAAGAGGGTCTTGCAAAGCTTCTTCCTATCGGGCTGTTGCAATCTCGTTTCAAGTCCACCATTACGGAACCAGTGCCCTCGACGGATGCACGCACACCAACACTAGAAGATCGCGCAAGTGCCGAACCAATGTCGCGTGGTTTGTCACGCATCGCATCCAATTCGTCCCTTTCGTCCCAACGCTCGAAACCGACCGGGAAGACAACTGCAAAGGGTGGAACGGCCGGccgtggaggtggtggtgttggcggcggcggtggtagTGAAGCAATTTCATTGCCCCAACCGGACAACAATACCGTATTTCCGCGTCGTGACGATCCAGCCCAGATGGTAGAAGCGCCGGTCTTTAAACCAACCGAAAAGGAGTTTCACGATCCAATGGAGTACATCGAGCGAATCGCACCGATCGCGTCTCGGTTCGGTATCTGTCGCATCATACCGCCGGCAAGCTTCAAGCCGGAATGTCGCATTGCGGACGATATGCGCTTCATGGCGTACAATCAGTACGTGCACAAGATGCTTCACCGTTGGGGTCCGAGCGCGAAAGAGTACGCCGCCATCAAGAAGTATCTGGCAACGCAAAGCATTAACCTTCAGTCACCACCGGTGATCGGTGGAATGGAGGTGGATCTGCCAAGGCTTTATCACACCGTACAGGAACTCGGTGGACTGAAAGAGGTCATCGAGAAGAAGAAGTGGGCCCGTGTATCGGAGGACATGTGCATTCCCAAGGCGGCGCACGATCGCGTTTCAAAGCTGGACGATATCTACTGCAAGTATCTGCTACCATATGATACACTTTCGCCGGCAGAGCGCCAGAAGCTGTTTGATGAGGTTGAGGCGGACTGGGCCAAGCGGGAAGCAAAGGCACGTCGGAACGCGGACAAGGGCGTGGGTTCGGAGATCCGCAACAGTGGCGATTCCGATGAGGATGATTCAAACgatgaggaggaagaagaggacgATGACGAGTGTTCAATGGAATGCATCGTAAAGGGACGCAGCATGCCGCTGAATCAATTCTTCCGAATCGCTCGCAACACCATGTCACTGTGGTTCCGGAACAGTGAACCGACGGTGGCAGAGATTGAGGCGGAATATTGGCGGCACGTAGCCGTCCGTGATAGccacgtgtgtgtgcattCGGGTTCGATCGATTCCAGCGCGTTTGGGTACGGGTTTCCAAGTCCAAAGGTGAAGGGATCGTCCTGTGCGAAACATCCCTGGAATCTGAAGGTACTGACAAATAACAGTGGCTCGATTTTGCGTTCACTTGGCCCTGTTATGGGCATAACGATCCCGACACTGCACGTGGGAATGTTGTTCAGTGCCTGCTGCTGGTATCGTGATCCTCATGGGCTGCCCTGGATCGAGTATTTACACACGGGTGCAAACAAGATCTGGTACGGTGTGCCAGACGATCAGAACGCTAACTTCCGTGCGGCACTGACCGTGCTCGTGCCAACACACTGCCAGAACAAAACGATCTGGTTGCCCTGTGACACTGCGATGGTGCCACCACACATGTTGACCGATCGGAGCGTATCTCTGTGCCGAACCGAACAACAACCGGGACAGTTTGTTGTGGTGTTCCCACGTGCGTACACCTCGAGCTTGTGCACTGGATATGCGGTTTCGGAGAGTGTTTACTTCGCTACGAACAGCTGGCTTGATACGGCAAAGGAAGATTTTAGGGATATACAGGAAAGCTGCGAACCGACGATGTTCTCCGTGGAGCAGCTGCTGTTTGCGATCGCGAACGATCAGCGCAGCAATCATGATACGCTCGTGCAAGCGTATCCCATGATCGTCGATATATACGAAAAGGAGAAACAACATCGACAAACGCTAAAGGAACAAGGCGTAACGAAATCGgaacgaatcgaatcgaaaaagAAGAGCGCATCACTCGACGAGTTCGAATGTGAGCGATGCCGGGCGAATCTCTATCTTTCGCTGGTAAAGGTAAAAGTGAGCAATAGCGATGAGGATGACGATGACAATACGACGGAGGATGAGGAGGAGCGCATCTACTGTCTGAAGCACGCCGTGAAGCATTTAGTGGACGGCGGTCTGCAGACGAAAAACTGTCGGCTGGCGTTCACCTACTCGCTGGAAGATATTGAGGAGCTGTTGAAGAAGCTGCAGGACCGTATCGCCAACAAGAAATCATCGAAATCAAGTGCCGGCAGcagtgctggtggtggtggaggtggtggtggtggtggcggtggggGTGGAGGTGGACGTGGAAGACGCTGCTGCAAGGAGGCCTCCCACAAAGCAGGGAAGattagaatgttttgtttatatcaGGAACATACTGTTCTACTGATATTAAGTTTTATACGTTGTAACGATTTACTCTCGCTATCACTGGCACACGCTGCCTGCACCGGTCACCTTAAGCTcctgataaaatattaa
Protein Sequence
MVVSKEGKRRRKVSAIAQAGGGSTNPSSGSGSNGPITSVAAERDLSPPEIPKRPKVHAQRKFAQGQGTASSSYLSYSSAPPTPGKDGQNRASHSGTGNGTTPSVPGSGSGAEASPQVPELLPNMRPNTEDFLTFLCFRGTPVLPPALDFFNKSNSGASATNAGNSSSGGRQSSTPGGSGSSKLKSQQTKIAASTSVTPGPPAMPSSTSAKATDAKQTHEKQDNANSNKSVQHEPVSQEKQITPTPATTAPAATYIPFAVRKRAEQHPVPAETRSDRKRTQDKMQALRKKYHDQRVAKLRATTQGQRQSGRGSVSIATRSSSVPSKPAREEQDDEEENGSENEADEVEAEDEGREEKKQDKKVSTDEPSVGKRKSGLRSGATSHTSSPAVESAKGSPIKIARNAKRDSAKATAVVQEETSKESPAKTVESKTPNKPGKSSPPTNTPVEESSKPSATRSANTVSKKSVKESPKNSPAQHQKPTTTVSDVEGNEKRTTRLSALRNPPPVAAKSETPKSAKDKRKQTDRPVDFSSDDDEPLSRATGTEKRSSEAVTANELGKTTRSGRSRKSEPANLDKDADEMPDKKTRRSESVVSRRSDISSRKSEMREIGVTKKVEEVAPKQQQQRGRKRKEPTQPQQVAKSSKEDESNNDVKNELLSTESVEQADRKQPATSGRKKRETPAIDAARDGTLTPEVEEKKPKTASSTPVESLSTSRPSRKTKEAATLYMELIGRKLNHDDQSDDDASSLDSLELPNVRKLERMENELKANASKTRDAKQQAAGGGSAKAGGKAKKKANETKLATNSLDDTDKQQPADGDDTKIVEKSFSDSDEEPLASKFQRKQQQTRRQPAKAKGTAAKVPVGRRNAKKVNVPDEAESGDEQTSPEKNESPQKPSKSDETAPKKGTVTTPMAVTSTAISPSAGTAKQNGTLGGNIPAGSVMRTPTKSALNSPVESPVLSSDHLKSPTTSEGQNMSRLNKSMDNTQLSTTVEPAESPIKIPQMLNIPTVIPSQTPSFLQVTSPTHQQAPFTRAIKPTLGTAPGTAANNVSTDGYLSLNKSPTGTAIHTSQPDTNNMPFNRSGTVTIATGAGATGTPKADFTLPLDESNFMKGFEKCSSTDPNAADKPGAAHSSLLGNLLPSKEESEKIFGIASVSLAQSSGPLDTKCTLGKCGSVHKPPLGPPVLTESLLGGNLSPRDRRKAKVNMTHEQIQKWIYESSWSPIEDDLKDDDLEVVEPGTRTPPPPSSSASATQLTATTQPSSVATGSGWAGMMASTSTPLSTPTVGNGRGKEEPDRTQAVSSGPVSTTMSTVVEKKETASQSTQKEPAVPMAQEIKPVSSDKDCTTPAKTRGEGQPAKEVSGVATPTSSKQRDVKEQRKSKAETPTAPATSTPRTTATTPTTSADRKPIYRNATGRTPVYKQEALTVKQTPATQTTPSSHQHTPSMSTSTKQIATGGAPGSSSTQSNKFGAFSPVNEPSVYSFDKEEDFMPVATPFRRQHGAASGGSGRRESCNSSARDEPTIGGSNKRDTTPVADEKNAFQKPPVVAKASNVANVVVNSDEKIKPTEPSVEDGNVTEKKEETAVKQEASDTEADGGGGQTFYIPLQGPTAGGGTGGGSSTGKSADQLIQGVAVKLGTEGPDGPNQRVIMHAKLVTKAEMGSNPTTLPDSMNVQELVKSLTAQGGAAAALGKEGLAKLLPIGLLQSRFKSTITEPVPSTDARTPTLEDRASAEPMSRGLSRIASNSSLSSQRSKPTGKTTAKGGTAGRGGGGVGGGGGSEAISLPQPDNNTVFPRRDDPAQMVEAPVFKPTEKEFHDPMEYIERIAPIASRFGICRIIPPASFKPECRIADDMRFMAYNQYVHKMLHRWGPSAKEYAAIKKYLATQSINLQSPPVIGGMEVDLPRLYHTVQELGGLKEVIEKKKWARVSEDMCIPKAAHDRVSKLDDIYCKYLLPYDTLSPAERQKLFDEVEADWAKREAKARRNADKGVGSEIRNSGDSDEDDSNDEEEEEDDDECSMECIVKGRSMPLNQFFRIARNTMSLWFRNSEPTVAEIEAEYWRHVAVRDSHVCVHSGSIDSSAFGYGFPSPKVKGSSCAKHPWNLKVLTNNSGSILRSLGPVMGITIPTLHVGMLFSACCWYRDPHGLPWIEYLHTGANKIWYGVPDDQNANFRAALTVLVPTHCQNKTIWLPCDTAMVPPHMLTDRSVSLCRTEQQPGQFVVVFPRAYTSSLCTGYAVSESVYFATNSWLDTAKEDFRDIQESCEPTMFSVEQLLFAIANDQRSNHDTLVQAYPMIVDIYEKEKQHRQTLKEQGVTKSERIESKKKSASLDEFECERCRANLYLSLVKVKVSNSDEDDDDNTTEDEEERIYCLKHAVKHLVDGGLQTKNCRLAFTYSLEDIEELLKKLQDRIANKKSSKSSAGSSAGGGGGGGGGGGGGGGGRGRRCCKEASHKAGKIRMFCLYQEHTVLLILSFIRCNDLLSLSLAHAACTGHLKLLIKY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00097569; iTF_00101480;
90% Identity
-
80% Identity
-