Amel008901.1
Basic Information
- Insect
- Anopheles melas
- Gene Symbol
- -
- Assembly
- GCA_000473525.2
- Location
- KI921846.1:732-2354[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 0.32 4.5e+02 0.5 0.0 3 14 235 246 234 249 0.88 2 4 1.5e-07 0.00021 20.7 0.2 4 36 300 333 298 336 0.87 3 4 0.00019 0.27 10.8 0.0 21 42 366 387 353 389 0.85 4 4 1.7e-11 2.5e-08 33.3 0.0 4 38 409 443 407 448 0.94
Sequence Information
- Coding Sequence
- ATGGCGAACAGCTCGTGCTTGACGTGGCTCAACTTTCGCGAGCACATGCTAAGCATCTTATGCGGAATCTACAACACGCAGCAGCACACCGATTGCCGCTTGATCGTACCCGACGGTGAGCTGTACGCGAACCGTCCGATCCTGTGCATGGCATCCAGCTTCCTGGAGACAATTCTGGACGGTCTGCCTACCATCGGTGCGGAAATGGTAACGATTGTAATACCGGATTTGACGCTGGCGACGTTACGCGCCGTCCTGCAGTTCATTTACACCGGGGAGGCAAGCGTACGGTCGGACGAGATGGCATCGTTTCTGGAGGCCTGCAGCTTTCTGCAGCTGCGCGGAGTGCGTTTTAACGCGGATCAGATTGTGGGCATACGATTCGGCAAGACTGTTGGTATGGTGTCGGAGGAGCTTATTCCTGCCAGCGAAGGTTTGGAGGCGACGGCATGCCCAAGGGAAGAACTGTTCGTTGCGCAAGTGGAGGAACAGACAGAAGGGGATGAGGAAGAGGAGGAACAAACAGAAATGCCTATAACACAATCACTAGTCCAACCTGTTGAATGCTTCATTCCGGAATCGAGAGAATCAGTCCAAGAACACGTTGAAAGTAATGAAATTGTTCAAGTCGTGTTGAATATCCCATCAGACGCGACTCCTGCCTGCGAACGGGAAACCTCTCAATGTGTAGAAATGCCACAGGAACGGTTAACGCAAGCAATTGAAGCAATTATAAAGGACCATGAAAGCTATGAAATCACATCCGTTCCATGTGCAATCGACACCACCGTCCCAACCCCGTCGGAAACAAATGCATCGATCCTTCCGCCGTTCGAAGTTGAGCTGGAACAAGCAAAACCCGAAACACCACTATCCGACCCTGCCAGTTACGATGCACGGCTTGCGTTGGCAATGGATGCAATCCTTCACCAGGGCATTAGCTACCGGATTGCCGCCAGGCAGTACAGCATCGCTAAAACGGTGCTGTGGCGCAAGGCGATGAAAATGCCGCGACCGGTTCGGGCCGGCTCCCCGAAGCTGAGCGCCCAACGGCGGGAAGCGATCGATGCACTGAAAACGGGCGAGAAGCTCGCACACGTGAGCCGACGGTTCGAGATTCCGCTGTCGACGCTGCACCGGGAAAAGCAACGGCTGTACAGCAAGGGCGCACTGCCGAGCAATGTGTCGCTGAAGCTGCGCGGTAAGGATGAGTCGGTGCGGAAGCGGTTGCAGGAGGCGGTGGGTGACTGTGTGGCAGGCAGGATGTCACTGTCCCTGGCAGCCCGGACATACGGCCTGCCGAAGACGTCCATCTGGCGCAGGGTACGATCGCTACAGACCAGTGGCTGCGGTAGTAGCGGCATGAAGGAGGAGAATTCTGCAAGCGACGCAATGGCAGAGCGACCGAATCAATCGGAAGAGGCTGAGGTGGAGGAGGAGGAGGAGGAGGAGGAAGATGATGGTAAGCTAACGATGGACGGCATCCTGTTAAGGGGGAGTGATACGCTTCAGGTTGGGGCAGGATATATGTCCGACGAGAATATTTCGGCGAGCGATTTAGCGCAATTAAGGTATCAGCTGACCTCGAACTATGACCATCACGTATTGAATGATAGTTTATAA
- Protein Sequence
- MANSSCLTWLNFREHMLSILCGIYNTQQHTDCRLIVPDGELYANRPILCMASSFLETILDGLPTIGAEMVTIVIPDLTLATLRAVLQFIYTGEASVRSDEMASFLEACSFLQLRGVRFNADQIVGIRFGKTVGMVSEELIPASEGLEATACPREELFVAQVEEQTEGDEEEEEQTEMPITQSLVQPVECFIPESRESVQEHVESNEIVQVVLNIPSDATPACERETSQCVEMPQERLTQAIEAIIKDHESYEITSVPCAIDTTVPTPSETNASILPPFEVELEQAKPETPLSDPASYDARLALAMDAILHQGISYRIAARQYSIAKTVLWRKAMKMPRPVRAGSPKLSAQRREAIDALKTGEKLAHVSRRFEIPLSTLHREKQRLYSKGALPSNVSLKLRGKDESVRKRLQEAVGDCVAGRMSLSLAARTYGLPKTSIWRRVRSLQTSGCGSSGMKEENSASDAMAERPNQSEEAEVEEEEEEEEDDGKLTMDGILLRGSDTLQVGAGYMSDENISASDLAQLRYQLTSNYDHHVLNDSL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00102480;
- 90% Identity
- iTF_00102480;
- 80% Identity
- iTF_00104499;