Amac004506.1
Basic Information
- Insect
- Anopheles maculipalpis
- Gene Symbol
- -
- Assembly
- GCA_943734865.1
- Location
- CALSEK010000060.1:596408-598672[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 2.7 1.4e+02 3.0 0.1 3 23 240 263 238 263 0.80 2 12 7.8e-05 0.0042 17.3 1.4 2 23 271 292 270 292 0.96 3 12 4 2.1e+02 2.5 0.6 12 23 343 355 340 355 0.83 4 12 0.0033 0.18 12.2 0.6 2 23 363 384 362 384 0.98 5 12 0.091 4.9 7.7 0.1 9 23 472 487 470 487 0.90 6 12 0.0026 0.14 12.5 0.9 2 23 495 516 494 516 0.96 7 12 1.7e-05 0.00089 19.4 0.3 1 23 547 570 547 570 0.96 8 12 0.0045 0.24 11.8 0.5 3 23 577 597 575 597 0.95 9 12 8.9e-06 0.00048 20.3 2.6 1 23 604 626 604 626 0.96 10 12 0.01 0.53 10.7 0.1 3 23 643 664 641 664 0.96 11 12 8.4e-05 0.0045 17.2 2.9 2 20 671 689 671 691 0.94 12 12 7.7e-05 0.0041 17.3 4.6 3 23 700 720 698 720 0.97
Sequence Information
- Coding Sequence
- ATGGAAGGAGTCGTAGCACCACCGCAGCCGCCGCCACCGCCGCCAGCAGCACCACCTCCAGCACCACCGAACGATGTTTACGATGTCATCAATCAAAAGGAATGTGGTATATGCCTCACGTTCCGGACGGATCAGATCTGCTTCGACATGTTTATGCCCCGGGAGGACGATCTGAAGGAGATACCGTATCTGGTGTGGAAGCATGTCGGACTGCAGTTTCCGCAGGAAACGGGAAAGCACTACGTGTGTCGGGACTGTGGGAATGCGGTGTACGAGTTCAATCGGTTCTACCTGATGGTGCAGAACGTGCACCAGGAGCGGCAGGCGGCGGTGTTACAGCAGGCGAAGCAGGAACAGAGTGAACCGAGCGCGATTGTGGAGCAAGCGGTTCAGGGCGTTAGTCATCAGCAGAATGGGCATGATGGTGAGATGAAGCTGGAACCAGCACCGGCACAACAGCTAGATGGGCCCGGTGGTGGTAGTGGGCACCCGGTGCAGGACGTTCCGGAGTATGGTGTAATGCCCGAAACAAACGGATTGGCGGGACGGGGCAATGGTACGGTTACGGACGGTACGGTCCAAGGGATGGGATCGTACCCGGGGCAGAACGATACGGAACCGGAAAGTAGTCGAATCCGGCCACCGGCCGGCACACCGAGCCGAAAGCGCAAGAACCAAGAGATGGACGAGGAGATTATTGACTTCTACAAGCTGGTGTGTGACGTGTGCGAGGACCGCATAGAGTATGGTACGATGAAGGAACTGAACCAGCACATGAAACAGATGCACGGTGAGGAATCCGGCCGGGTAAGCTGTCCGCAGTGTGGCAAAATGTTCCGGACACGGGTGAAGCTGCTCGAGCACAAACATGTACACCTGCGTCAGGACACAACGTCCGAGGACGACGCGGAAAAGCTACAGTCCGAGCAGATGGACAAAGAGATATTGGAATTTTACAAGCGAATCAGCTGTGAACTGTGCGACACGACCGGCGGTACACCATCATCGACCAGCACCCTTTACGCGACCGTCAAGGAGCTGAACCACCATATGCGGCTGGTGCATGGACAGCAGGCCGGCACGGTCAAGTGTCCGCTGTGCGAGAAGAAAATCCGTACGCGACCGAAACTGCTCGAACACAAGCGTATGCACCAAACGCCAAACGTGCTGCTGGAGGAGGATTCTGGCAAGTCGGGCAATGCAGGCGGTGAGCCCGGTCCCGAGCTGACGGAAGAACAGAAGCAGACGCTAGATAGAGAAATATTCGATTTCTACAAACCAATTATATGCGAGATTTGTGAACCAGAACGTGCGGCAACAACCGGTCAGAGCGAATCGGGACCCGTTAGGGAGGGTCAGGGAGAGGTGGCAGTGGCTGTGGCGGTGGCGACTGTGGCACCGACGGCCGAAGAGGAGTATCGATCGTTAAAACAACTAAATCAGCACATGCGGACGGTGCATGGACTAGAATCGGGCACAATCAAGTGTCAGCTGTGTGCGAAAAAGTTTAGATCGCGCGTCAAGCTGATCGAGCATAAGGAGATGCACCAAAATCCGGAACGGTTCCGGTGTGGCGTGTGCCAGGAGGTGCACCAGAACCTAGAGGAACACATGCAAAACAAGCACCAGGAGTGGGAGTTTGCGTGTGAAGAGTGTGGCAAGCGGTTTCCTTTCAAGAATCGGCTGACCGCGCACATGGCGAAGGTTCACATGAAGAAGGACATTATCTGTGAGGAATGTAACAAACCATTTACCAAGTTTAGCATCGAAAAACACAAAAAGACGGCCCACGGTGGGGCCGGCGAGATGTTCCACTGCAAAAGCTGCCCCAAAACGTTCAAGACGCGCGTTTCGCTCGAGCGGCACATGGAGGGCCACAATAATGGGGGCGAGCAGCCTGTCGGTTCGGCCGCCGCTACCGTGATCTGCGCGATCTGCAACTCGGTACTGAAGGGCATGTACAACCTGAAGGCACACATGAAGCGCGTACACGTCGAACAAACGCCGGCCACGTGCAGTACGTGCGGCAAAACGTTCAAATCGAAGCACAGTCTCAATACGCACACCACGAACGTGTGCAACATGCGACAGTTTGGCTGTACGCACTGTGGCAAGCAGTTCAAAAAGCGGACAAAGCTGAAACAACACATGACGATTCATGCGCGCGGCGCCGACTAA
- Protein Sequence
- MEGVVAPPQPPPPPPAAPPPAPPNDVYDVINQKECGICLTFRTDQICFDMFMPREDDLKEIPYLVWKHVGLQFPQETGKHYVCRDCGNAVYEFNRFYLMVQNVHQERQAAVLQQAKQEQSEPSAIVEQAVQGVSHQQNGHDGEMKLEPAPAQQLDGPGGGSGHPVQDVPEYGVMPETNGLAGRGNGTVTDGTVQGMGSYPGQNDTEPESSRIRPPAGTPSRKRKNQEMDEEIIDFYKLVCDVCEDRIEYGTMKELNQHMKQMHGEESGRVSCPQCGKMFRTRVKLLEHKHVHLRQDTTSEDDAEKLQSEQMDKEILEFYKRISCELCDTTGGTPSSTSTLYATVKELNHHMRLVHGQQAGTVKCPLCEKKIRTRPKLLEHKRMHQTPNVLLEEDSGKSGNAGGEPGPELTEEQKQTLDREIFDFYKPIICEICEPERAATTGQSESGPVREGQGEVAVAVAVATVAPTAEEEYRSLKQLNQHMRTVHGLESGTIKCQLCAKKFRSRVKLIEHKEMHQNPERFRCGVCQEVHQNLEEHMQNKHQEWEFACEECGKRFPFKNRLTAHMAKVHMKKDIICEECNKPFTKFSIEKHKKTAHGGAGEMFHCKSCPKTFKTRVSLERHMEGHNNGGEQPVGSAAATVICAICNSVLKGMYNLKAHMKRVHVEQTPATCSTCGKTFKSKHSLNTHTTNVCNMRQFGCTHCGKQFKKRTKLKQHMTIHARGAD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00101878;
- 90% Identity
- -
- 80% Identity
- -