Amac001619.1
Basic Information
- Insect
- Anopheles maculipalpis
- Gene Symbol
- Zbtb41_2
- Assembly
- GCA_943734865.1
- Location
- CALSEK010000026.1:204240-205430[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.036 1.9 8.9 6.6 2 23 93 114 92 115 0.94 2 10 0.0046 0.25 11.7 1.6 2 23 132 153 131 154 0.94 3 10 0.12 6.2 7.3 0.0 2 23 159 180 158 180 0.95 4 10 0.0012 0.063 13.6 7.1 1 23 190 212 190 212 0.98 5 10 1.3e-05 0.0007 19.7 0.3 1 23 218 242 218 242 0.95 6 10 7.6e-06 0.00041 20.5 2.1 1 23 248 271 248 271 0.97 7 10 0.025 1.3 9.4 0.1 3 20 284 301 282 303 0.93 8 10 2.2e-06 0.00012 22.2 3.7 1 23 312 334 312 334 0.99 9 10 0.00012 0.0064 16.7 0.1 3 23 343 363 341 363 0.98 10 10 0.0029 0.16 12.3 0.3 1 23 369 392 369 392 0.95
Sequence Information
- Coding Sequence
- ATGTTTGCACCAGCAGGTCCGCGCATCGATTGGTTTGTGGATGCAGGCGATGATGTTTGTGATATGTTGCCGCTGATTCAGGATGCCGATAGTAGTGTTATCGCTAAGGAGGTCACCTTTGATGCTAGTGAGTTTTTCGAGCCACCCGCATTCGAGGAGCTACCTTACGCAGCGGACTTTGTCCTGCACGGTGATCATCAGCTGTTTACGGAAATCGATTGGGGCATAGTGGCTGAAACAAACGTCCAGCAAGTAACATCGATTGCTACAGTTTTAGTGTGTGATATTTGTAACGTGAGATTCAGATGTAAAACGCATCTAAACCGTCACCGGCTTTTGCATCATGCAGAGGATTTGGAAAGCTCTAAGAAAGGCATCGTTTCTCGATGCCTCCAGTGTCGTCAGTGTGATGATCGTTTTGTATCGGCCAAGCAGTTGAAGCTACATCTAACGATACACCATTCAAAGCGCTTGGTGTGTGACCTATGTCTAACAGCATTTCAAAACGATGCAGCCCTTGAATGGCACCGGAACGATCATCTGGCGAAGAAGAATGAAACCGGAAGATACGTATGTGACGTCTGCCGGAAACAATGTACGAGCTCAAGCCATCTGCATCTGCATCGGAAAATTCATCTCGAGCAGAAATCCTATCCTTGCCCTTTTGGTTGTGATCGTAGCTTCTCATCGTCCGGCAATCGGCAGAAACATATTGTAAGAATGCATACGCGCGAGAAAAAGTACAAATGCACAAACTGTAACGAATCGTTTGTATATGCTCGCCAACTACAGCGTCACCGCGAACGTAAACATGGTGAATTTAAAAAGAACTCTATAGGCAGGATCATTTGCACGAGATGCAAGGAGCCGTTTGATAGCGAGAGCTCTTTCCAGGACCATACAGCGTATGATGAGTGCTTGGAGCATCGTGCATTCCAATGTGTGTTTTGCAGCAAATCCTTCAAACAGGCCACACATCTACGAAACCATATACTAACGCACCAGCAAGATGCACGGGCTTTTGGGTGTGAATTTTGCCCAAAACGATTCGCTTTGGCAGGGGATCTTAAAGTGCATCGGCGCATACACACAAAGGAGAAACCATTCCGGTGTAGTGTTTGTCCGGCCGCCTTCGCGATGGGCAAGCAGTTGAACAAACATCGATTCAAAGCTCATCAAATTGCTAAATGA
- Protein Sequence
- MFAPAGPRIDWFVDAGDDVCDMLPLIQDADSSVIAKEVTFDASEFFEPPAFEELPYAADFVLHGDHQLFTEIDWGIVAETNVQQVTSIATVLVCDICNVRFRCKTHLNRHRLLHHAEDLESSKKGIVSRCLQCRQCDDRFVSAKQLKLHLTIHHSKRLVCDLCLTAFQNDAALEWHRNDHLAKKNETGRYVCDVCRKQCTSSSHLHLHRKIHLEQKSYPCPFGCDRSFSSSGNRQKHIVRMHTREKKYKCTNCNESFVYARQLQRHRERKHGEFKKNSIGRIICTRCKEPFDSESSFQDHTAYDECLEHRAFQCVFCSKSFKQATHLRNHILTHQQDARAFGCEFCPKRFALAGDLKVHRRIHTKEKPFRCSVCPAAFAMGKQLNKHRFKAHQIAK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -