Amac012966.1
Basic Information
- Insect
- Anopheles maculipalpis
- Gene Symbol
- -
- Assembly
- GCA_943734865.1
- Location
- CALSEK010000293.1:59166-61674[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.0042 0.22 11.9 0.5 2 23 141 163 140 163 0.95 2 14 0.0015 0.08 13.3 0.5 1 20 174 193 174 195 0.95 3 14 0.012 0.67 10.4 0.4 1 12 334 345 334 347 0.90 4 14 0.00066 0.035 14.4 2.2 2 21 447 466 447 467 0.93 5 14 0.97 52 4.4 0.6 1 22 474 495 474 498 0.89 6 14 0.0023 0.12 12.7 2.1 1 23 524 548 524 548 0.93 7 14 0.0038 0.2 12.0 0.3 1 21 574 594 574 595 0.92 8 14 0.0058 0.31 11.4 0.1 1 23 602 624 602 624 0.98 9 14 0.00026 0.014 15.6 2.0 1 21 630 650 630 652 0.95 10 14 4.4e-06 0.00024 21.2 2.0 1 23 657 680 657 680 0.95 11 14 0.00082 0.044 14.1 1.2 2 23 686 707 685 707 0.96 12 14 1.7 92 3.6 0.4 3 23 715 739 713 739 0.84 13 14 4.1e-05 0.0022 18.2 2.5 1 23 745 767 745 767 0.98 14 14 1.3e-05 0.0007 19.8 0.0 1 22 773 794 773 794 0.97
Sequence Information
- Coding Sequence
- ATGAGTTCAAAACATTGCCGCATATGCTATAAACTCGATCAGGACGATCTAATTTCCGTGCGGCTGAAGCAGGATGGCATAAGCATCGAGGAGATGATACTAACCATAACAAACATTTCCGTTTCGGGCGATCGTCGATTGCCGCAAAACATATGCCTACAGTGTTTAGATCGACTGAAGGAAGCTTTCGAACTGCGCCAGCTATGCATCCGTACACACGAACGACTGTCTGCAGAGCTAGAAGCCGACAAGGATGTAATCATACCTGAAAATGAACCAATTAAGCCGGAACCGGACGATGTGACTATTGATGAGGCTTCGGTTATTATAGAAAAGATCGAAATTGATACGCTTGGTGAGGGAGTGTTGAATCTGACTTCGGAGCAGTCTGACCAGCATTACGAAGCAATCGAAGAGATTGTTTGCTGCGGATGTGCAATGCGATTTAGCACCCGGTATGAGCTGGAGGAGCACGCTAAGGTACAGCATCGAAATGGGAAAGCAAAACCAGATGATGCTTTTCATTGCTCAACATGCTACCAATCGTTTCCGGATCAAGTGATGCTCAATCGTCATCTAGAGGAGATAAGTCAGATGAACACCCTTACAGAAGAAGAGCTCGAATTTAccgatgagtatgaggtggacgaggaggagaagcaggatgaggaggaggagaaggaggaggaggaggaggaggagaaggaggaggaggaggaggaagatgaagcaaatgaaagcgACCAAGATCGTGTCGATTGGGAAGAACAAACGAACAAAAAGCTAAAGCAAGCAGCAATCATACAAAGCGCAATATGTCGTATACCGGGGAAAAATTTGCTAATCAAATCAGACGAATCGCAAGGATATTTGATTGTCGAACTGCAACCGTACCGGTGCTGCTGCTGTGCGGAACTGTTCCAAACCGAGCAGGATCGGAACGAACATTTAAAGGAACGAATGGGAAGCAACGAAGGCGCGTCGGATTCCGGCGCGAAATATACCTGCGAATACTGTGGCAAACGCTTCGCCTACTGGCTGGTGTATTTGTGCCACAAGCGCGTACGGGACCAGCGTCAGTTTTACATGTGTGGACTGTGCGAGACGCTGCTGGACTCGAAAAAGCGCATGATATCGCACATGCTGATGTCGGACGAGCATGCGGATTATTTTAAACTTTCCCGAGCGAATATCGCCGATCAGTACGAAGCGATTGCACTGCCTGGGGTGCGTTGCTGTTGCTGCAAACAGTATTTTGACGATGAAGCGCAACGGAAGGAACACATGGCACGTTTGCATCGTTGTTTTATGAAAACGGCTGTTTCAAAATTGCCGAACAGTTGTAGCCTTTGTAACCGCAAGTTTCGAACCAAACGGCACCTGGAACTGCATCTACAGTATACTCGGGACGTTACACAGTACTACTGCAAGCTTTGTAGCTTTGAGACGTACAACCCTAGACGCCTGGAGCTACATCTTTACAGTGGCATTCATCGTGATAAACTACCCACCACCACGGTTCAGCTAAAACCATTACAAAACAGTCTCCTAAATGCATCCCGCTTACGGTACTGTTGTTTCGAGCACTGTCACAAACCATTCCCCGATGGTTCGGCGCTTGAGCAACACATAAACGAAGCGCACGAATCGGCACTAACGGCAAATCGGAAGCAGACGGAAAAATTAACCCACCTACTAGAACAGTGCGAAGGAACGTACCACGCGTGTAACGATTGCGGCGTACTGTTTAAAAACTTAACCGCCCTACAAACGCACCGGTCCCGTCGCCAACCCCGCCAAGCGTTTGTTTGTACGATTTGTGGCGTATCGAAAGCATCGCGTGCGTTACTACGCAACCACGAACGATCCCACTCCGCTGAGCGACCCTATCGCTGTGCGGATTGCGAAAAAACGTTTAGCAGCAATCCTGCGCTACTGTCCCACCGGCGTTGCCATCTAACCGGCACGCACAAGTGTGACACATGTGGGAATGTATTTAATCGGAAGGAAAATCTTAACCGTCACATACTGCTTAAGCACGGCATAGCTACGATCCCGTGCGAAGATTGTTCGAAGCTATTTAAAACGATCCATGCACTGAATCGTCACAAGATAAGGCACACCGGCGAGAAGCGATACGCGTGCCGGAAGTCGGAATCGTGTACGAAACGGTACGCGAATGAGGTTGACCGTCGGCGGCATGAGATGTCGGTGCACACGCTCGAACGACCGCACCAGTGTGCGCACTGTGGGGCCGGCTTTGTACGAAAGCGACAGTTGACGGTGCACGAGCGACGGCACACGGGTGTGAAACCGTACGCGTGTACGGTGTGTGGGAAGGAGTTTGTGGATGCGGGACCGTTGCGGAATCATATGCGAACGGTTTGCAAATTGCAAGTGATTGGGAAGGAGGGGATGGAATGTGACTTATGA
- Protein Sequence
- MSSKHCRICYKLDQDDLISVRLKQDGISIEEMILTITNISVSGDRRLPQNICLQCLDRLKEAFELRQLCIRTHERLSAELEADKDVIIPENEPIKPEPDDVTIDEASVIIEKIEIDTLGEGVLNLTSEQSDQHYEAIEEIVCCGCAMRFSTRYELEEHAKVQHRNGKAKPDDAFHCSTCYQSFPDQVMLNRHLEEISQMNTLTEEELEFTDEYEVDEEEKQDEEEEKEEEEEEEKEEEEEEDEANESDQDRVDWEEQTNKKLKQAAIIQSAICRIPGKNLLIKSDESQGYLIVELQPYRCCCCAELFQTEQDRNEHLKERMGSNEGASDSGAKYTCEYCGKRFAYWLVYLCHKRVRDQRQFYMCGLCETLLDSKKRMISHMLMSDEHADYFKLSRANIADQYEAIALPGVRCCCCKQYFDDEAQRKEHMARLHRCFMKTAVSKLPNSCSLCNRKFRTKRHLELHLQYTRDVTQYYCKLCSFETYNPRRLELHLYSGIHRDKLPTTTVQLKPLQNSLLNASRLRYCCFEHCHKPFPDGSALEQHINEAHESALTANRKQTEKLTHLLEQCEGTYHACNDCGVLFKNLTALQTHRSRRQPRQAFVCTICGVSKASRALLRNHERSHSAERPYRCADCEKTFSSNPALLSHRRCHLTGTHKCDTCGNVFNRKENLNRHILLKHGIATIPCEDCSKLFKTIHALNRHKIRHTGEKRYACRKSESCTKRYANEVDRRRHEMSVHTLERPHQCAHCGAGFVRKRQLTVHERRHTGVKPYACTVCGKEFVDAGPLRNHMRTVCKLQVIGKEGMECDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -