Amac011253.1
Basic Information
- Insect
- Anopheles maculipalpis
- Gene Symbol
- -
- Assembly
- GCA_943734865.1
- Location
- CALSEK010000202.1:991123-993334[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 1.8e-05 0.00095 19.3 0.9 2 23 30 51 29 51 0.96 2 17 4.1 2.2e+02 2.4 10.6 1 23 57 79 57 79 0.97 3 17 0.00095 0.051 13.9 3.8 1 23 85 107 85 107 0.97 4 17 0.015 0.8 10.1 0.4 2 23 113 135 113 135 0.94 5 17 0.00019 0.01 16.1 2.4 2 23 142 163 142 163 0.97 6 17 0.0022 0.12 12.7 0.0 2 23 167 188 167 188 0.97 7 17 4.3e-05 0.0023 18.1 0.4 1 20 195 214 195 216 0.94 8 17 0.0049 0.26 11.6 5.2 1 23 221 244 221 244 0.98 9 17 1.5 78 3.9 0.1 1 23 406 429 406 429 0.91 10 17 0.00081 0.044 14.1 6.4 1 23 434 457 434 457 0.98 11 17 1.4e-05 0.00073 19.7 2.3 2 23 463 484 462 484 0.97 12 17 0.0065 0.35 11.3 0.2 1 23 490 512 490 512 0.97 13 17 0.00022 0.012 15.9 1.0 1 23 518 540 518 540 0.98 14 17 8.5e-06 0.00045 20.3 0.2 1 23 546 568 546 568 0.98 15 17 0.001 0.055 13.8 0.1 3 23 576 597 574 597 0.96 16 17 7.7e-07 4.1e-05 23.6 1.8 1 23 611 633 611 633 0.97 17 17 7e-05 0.0037 17.5 2.6 1 23 639 662 639 662 0.96
Sequence Information
- Coding Sequence
- ATGCAATCTACCTCGGAAAAACCTGACAAAAACGTTTGTCTAGAAGTGGCACGATCCGCCGTCAAGAATGAAAGCAAAAGCGCCATTTCCTGCGAGTTTTGTGGTAAAACGTTTAAATTCAAGGCAACACTTCGCCAGCACGAACAAATCCACTACGGTATTAAGCAGCATGAGTGTGAGATGTGCCATCGTCGATTTTTGCACAAAAGTACCCTTAAGTGCCACCTTCGACTACACACCGGCGAGAATCCGTACAAGTGTTCCTATTGTCCGAAAACATTCCGTGGCCAAACAGCGCTAAACTGCCACATCTTTCGTCACACGAACGAAGGAGCAAAATGTCCGGTTTGTCTGAAGGTGTTTGCTACGAGTTCGATAGTGAAGCAGCATCGAAAGCAGGTGCATACGAACGAAAGGCTTAATGTGTGCAATCTGTGCGGCATGACCTACAAGCATCTGAAGAGTTTGAGACTACATTTGCGTAACCACCAGAAGCGAGTGTGTCCAGAGTGTGGTGTTGGATTTGATAGTGTGTACGCGATGCTAAAGCACCGAAAGTCGCACACGAAAGAAAAGCTACCGTACAAGTGTGAACACTGTGATCGAGCGTTTGAGGATCGATCGAAGCTTGCTTCACACGAGAACTTGAGGGGTCGGCGGTTTCAGTGCGAACTGTGCTGCCATAGTTTTAACAAACCAGACTACCTGACGAATCACCAGCGTCGTGTTCATTGGAAGGAAATGGGTCTCGATCGGCTAAAAGTGGCCCAACCACCGAATGGTTGGAACCGCAAAGGCATCCCAAAGCCGCAACGTTCAAAGAAAGCGATGAAAAGAACTGAGCCAGAAGCTTATCTAGATGATTTTGCTATGGTTGATGACGATGGAAAGCAATCATCAATAAGTGATGAGAAATATTTGGAGGAAAGGAATGAAAGTGCAGCTGATGAATTGACGATAGTAAAGGTTCAGCCGGTGTCAGCAACAGTTACATGTCCTGTAAATGTGAACAGAAGAAATGAAGAATCTTCAGACGTAATGGTCCAGCGAGAAATGTCGCCTGATGAAACAATTTTTAAAAGTGAAGAAAAGGCTAACAATCCAGCTGACTCGTCAAGCGTAAAAGCTTTACATGCTAGCCAGAAAGCAAACGAAGATTTTTGTTTGCCGTTATCATCAATCAACCCAAAGCCAAGACAAAGTTCAAAGGAGTCGTTCATCTGTGAATTGTGCGGCAACTTGTACGCATCCGGCACAACACTTGCCGTGCATCGTGTTAAACAGCACGCCAGTGCCCGCTTTCAGTGTGACCAGTGCCACCGAACCTTCGGCTTTCGTTGCTTCCTTGAAAAACACATCCGAACGGAACACGAGAATGAACGTGTTTCGTGCAAATTGTGTGACAAGCAATTCAAGTACGCACAAGATTTAAAGGTGCACATGCGACATCACGACGATCCCAAGCCATTCAAGTGTGATCAATGCGCTTCCGCATTTCGGTTTCCCGGTGCTCTAAGGTCGCATCGAATTCTACACCAAAATGAGCTACCGTTCAAGTGTGATGTGTGTGGGAACGAGTTTCGATTTGAAAATAGTCTACGTGTTCATAAACGTTTACATAGTGGTGTGAAGCAATTTAGGTGTGATATTTGTGACAGAGAATTCGCAACCAAAGCGCCTATGTTGCGGCACATGAAAGTGCACGAGAATGGTAAGGAAATGGCGTGCAGTGTTTGCGGCATGGTTTACTACAAAAAGGTTGATCTTGAAATACACCAAAGCAAAGAACACCCCAATCATGAGTCTGTGGCGGGAAAGGTGAAACCAATCTATAGCTGTGAGCAGTGTGGAAAAGAGTTTACCAAGAAAAGTAATCTTAAAGCACATTCGTACACACACGAAGAAGTGTATCGATTTACTTGCAAGCTGTGTAGTCAATCGTTCAAACAGCACGCTGGTTTGCGAAACCACATGATAAATAATCACAAACAAACAAGCCAAGTTTCGACGGCAACGGCCGAGCTGATCGATCGAATCGAAAATGTGCAGCCAAATGTTTTAAATTAA
- Protein Sequence
- MQSTSEKPDKNVCLEVARSAVKNESKSAISCEFCGKTFKFKATLRQHEQIHYGIKQHECEMCHRRFLHKSTLKCHLRLHTGENPYKCSYCPKTFRGQTALNCHIFRHTNEGAKCPVCLKVFATSSIVKQHRKQVHTNERLNVCNLCGMTYKHLKSLRLHLRNHQKRVCPECGVGFDSVYAMLKHRKSHTKEKLPYKCEHCDRAFEDRSKLASHENLRGRRFQCELCCHSFNKPDYLTNHQRRVHWKEMGLDRLKVAQPPNGWNRKGIPKPQRSKKAMKRTEPEAYLDDFAMVDDDGKQSSISDEKYLEERNESAADELTIVKVQPVSATVTCPVNVNRRNEESSDVMVQREMSPDETIFKSEEKANNPADSSSVKALHASQKANEDFCLPLSSINPKPRQSSKESFICELCGNLYASGTTLAVHRVKQHASARFQCDQCHRTFGFRCFLEKHIRTEHENERVSCKLCDKQFKYAQDLKVHMRHHDDPKPFKCDQCASAFRFPGALRSHRILHQNELPFKCDVCGNEFRFENSLRVHKRLHSGVKQFRCDICDREFATKAPMLRHMKVHENGKEMACSVCGMVYYKKVDLEIHQSKEHPNHESVAGKVKPIYSCEQCGKEFTKKSNLKAHSYTHEEVYRFTCKLCSQSFKQHAGLRNHMINNHKQTSQVSTATAELIDRIENVQPNVLN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -