Akol006562.1
Basic Information
- Insect
- Anopheles koliensis
- Gene Symbol
- -
- Assembly
- GCA_000956275.1
- Location
- JXXB01020303.1:7872-13701[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.0075 0.64 10.6 0.9 1 23 1270 1293 1270 1293 0.97 2 10 0.22 19 6.0 1.1 1 23 1433 1455 1433 1455 0.95 3 10 0.00041 0.035 14.6 1.1 2 23 1458 1479 1457 1479 0.97 4 10 0.00021 0.018 15.5 1.4 1 23 1485 1507 1485 1507 0.98 5 10 1.9e-05 0.0017 18.7 3.7 2 23 1514 1536 1513 1536 0.96 6 10 0.0049 0.41 11.2 0.4 1 23 1546 1568 1546 1568 0.98 7 10 7.7e-05 0.0065 16.9 1.8 3 23 1575 1596 1574 1596 0.96 8 10 0.019 1.6 9.3 0.6 3 23 1611 1630 1610 1630 0.97 9 10 2.7e-05 0.0023 18.3 1.3 1 20 1637 1656 1637 1659 0.92 10 10 0.028 2.3 8.8 3.1 1 22 1667 1688 1667 1695 0.92
Sequence Information
- Coding Sequence
- ATGAACCTAGCCGAACACCTGGACACGCATCCCAAGGAGAAAGTGATTAGTGCGTTGGTCAAGAGCTGGCTGTTGACCAAGAATGGGCCACCGAGTGAAGTCATCGAGATTGGAGGAGGGGAAGAgttgccgccggtggtggcgccaaagacgacgacgtcgacgacggtggtgctgACCGATTCCCCGCCAGGCAGCTCGCGGCCGATGAGCTCGGGCTACGAACCAGCGCAATCGATCTACCTGGATGGGGCCGGTTCGACATCTGCGCTGCTCGGCAACCCACCGGCCATGGCGGCCCCGATCGTGGTGAAGACGATGAACGCGTACGGTGTGCCAGGGTTTCAGCTGAACAATGTCACCTTCTTCAAGGAGCCGGTACCGGTCGCAGCAACGGTGACGATCACATCTTCCTCTTCCGAGGAGGATTTCGCGGCCGAGCCGCAGCCGGGAACGTCGAGTGGTCGTGGCGCAACTGCCGGCTCCACCGCTGCCATCTATCCGCGCTATACGAACGAGCTTTACTCggggccaccgccaccgtacaGTCGTGCGGTGACGTCCACCgttaccaccaacaccacccacATTGTGCCCGTGAGTCAACCGCAGGCAATGTTCCAGCATTCGAAAGCGACCACCATCAGCGAGCCCGTTAGCAAACCAGCTTCGTACGATGGCGGCGAGACGGGTTTCAAAACCGAACAGAGCTTTGCCAGCGGGCCCGCAACGACGTCGAATACGGTCTCGCCGACGGTCTCAGCCACGTCGACCGTATCCACCTCGCCATCATCGGTCAACTCGACGCCCCCCAAAGCCAACATCGTGCAGGTGCTGAGCGATGTGAAGTTGCAGAGCGACATAAAGGACTTTCAGGACATCATTACGCACCTGAACGCGGGTAAGATGGCGATCAAGTTCGAAGTGCCGGACGTGCCGCACGTATGCGAGGAGGAGTGCGAAGATTATGGCGAAACGGGCGTTGAAtggcaggaggaggaagagctgGACGAAGATGGAGTGGCGGGGGAGGAGGTGCAGGCGGCTGAGCAACAAATCGAacaggagcaggaggaagaagaaTGGCAGGAAATGAAATTCACCCCCGCAGTGGGTGAGATGGAGAGTGCGGCGGCCACACCGCCCAAAACCAGCGCCATGATGACGAGCGTCATACAGAAAACTCCACAAACACCGCCCGCACCGCCAGCCGCATCCGCACCTGACGCCTCGAAGATGGTGAAGATAGTGCTGTCGTTACCGGCCACAACGAAATCGAGCACTATGGCGAACGGTCAGCAGTCCCAGCCACCGCAGGCGAACAATAGCACCGGCGGCAAGCAATCCCGCCAGTCGCACGGACGCTTCCCGACACCGAAAAAGTTGGTGATAAAGCCGCTGCAGCCGGTattgcagcagcatcaccaaccggcccatcagcagcagcagcagcagcagcagtttgatCTGGATGCGACCGCGTTGAGCACGCTGGCGGAGGTCGTTTGTACAACGgctgcccagcagcagcagccgggcggTGAATCGGCGACGGCCGCCGTCATACAGAAGACGTCACCGATCAAGCGGGAGGCGATGCGGCAGGCGGTGGGAGGAGAAATACGCCCGTACGAGATCGACGTCGGTGCGTATAACATCTCGTACGTTGGGGAGGCGGGTGAAACGCACTACTATCCGCTGCCGAAGAATGAGGAGGAGATCATCCTGGTGAGCGACGGTGGCAGTGGCAATGGGAGCGACGGTGGCAGTGGCAATGGGAGCGACAGTGACGCCCAGCTGGTCCCGGTTGAAGCCGTGCTGGACGATGGTTCGCCTGaccagctggaggagctggtgTTGGAGGAGCGGGCCGAGGAGATGGAGGTGCCGATGGAAACGATCGACGTGGatgcggaggaggaggaggaaagtaAACCGATCGATATCGACGAAGAgtacgaggaggaagaggaggaggaagacgaggaagaggacatggacgaggaggacgaggaggaagaggaggaagaagatttggaggaggaagacgacgaggatgaggacgacgaggaggaggaggaggaggaggaggacgacgaggacggaGAAGAGGACGAGCAAGGGGAGGAAGATGGTGAGGGTGAGCAGAGCGAGCGCATGGGAGGTGTGGTGGGGATGCGAGCCCCCAAGGTGCGCTCCGGAAGCGTTCCTCCCTACAACGAGCGGagcggcaagcagcagcagcagcagcacgcggaGTACGCCGCGTCACGCGCCAACGAGGGCACCGTCGCACCGCCCAAGACGCTCCACGGGCACACGGTCGCCCGCAAGCGCAGCGTCACCATGATCGACgcggacgacgaggacgagaaGGATGGGAGGCACCGATACGCGAACACGCAAGCGTCGAAAATTGCGCAACATGTGCGAACGGTGCCATTGGAAGTAACAGCGATGGAGGGGAAGGATCGGGACGAGCTCGAGGCGGGaccgtcctcgtcgtcgtccgcatCCGGTGACGCCAACGGCCCGCCACGTCCGAAGATACGCATCACGTCCGCGCCGGGTTCGTACTGGCACGGCAAGCAAACGCCTGCGGCTTCTGCCAGCGGTGAGGAAGTGGCAGCGCCGGTGACGGCGAAGGTCGAACGTGACGATCCGGTGCCGTCGGCGGGCGAAGGGGGCACTTTCGTCTACGAGGAGGACACGTCGGGCGCTTCCTGCTCCTCGGCGGCCACTTTCCTGCGCAAGCGGGGCGTCGCGATTGCGGTCGTGACTCCGAGCGCGAGCGCCACGACGGTCAGCACCGCCGGCACGGGTGGTGTGTCCGGAGGGGAAGGCGAGGGCACTGGCGCCCACGAGGAAGCGGCGGCTAAAGCGAGCGCCAGCTGCTCCCAACACTCcaactcgtcgtcgtcgatgtaCTCGTCCAACGCGACCGTCACCACgtcgagctgctcgagcgcCGCGAGCCTGCTGATGGAGCGAGCGGCGTCCACCGAGAGCCTAAACATCCGCACCGACGAAAAGATGCCGGCGAAGGGCGAAATCTCCGAGCAGGAGAGCAACGGCGACATGGATGTCACGTCCTGGAACCAGCGGCTGTACGCGGTCGGTGACAACATGCCGATCTATCCGAGCTCGTACGATCTCTCCACCGCACAGGAGTGCTGGAATCTGAGCAGCCGCACGCAAAGCATGTTTGCGGGCAACAACGTGCAGTTTTACTACACGCCGCCGGAACAAGCGCAGTTTGGGAGCGGCAACAGTGGGCAAATTCCGCTAACAAGGGTTGCATTCCAATTTGCGGCAACCTCCACAAcgctgcaccagcagcagggagGTCCGcacatgcagcagcagcaccagccgcTGGGTATCGCACCGGAGCAGTTGCCGATGGGTGGAATCGGAATCATAGCAACGGCGGGGAAGATcgaaccgcagcagcaggatctcgcgctgctggagcagcaccagcagcagcaggacaaCGACATCGATACGGACACTGCCGACATGGACGAAACGACGCGCAACCGTTTGATGAAGAGCACCCTCCAGAACATGATCGTACAGGAGGATGGGgctccgcagcagcagcaggagcaggagcaggagcagcagcaaagcgtGCTGCCGATGTGCGAAACCAAGTACGAGGAAACGGGCCACTCGTCGACCGCGTCGTTCTTCGGTCTGTGCGACAAAGTCAACGTGCTGATGATGGCGGAGGGCGGCGGCAACGGCGGTTCGGCGGTTCAGCGAGCGCAAAAGCCGTCCGGGAGCGGAGTGTCCCGGACGTACCGCTGCGCGCACTGCCCGAAAGCGTTCGGTTCGATAAAGCTGCGGCGCGTCCACCAGCAGTCGGTGCACGCGGACGAGATGCGCCAGATGCTGATGTCGTTTGCGGCGTCCGGCGCCGCTTGTGGCGGTGGTAGCGAGATGGTTGAGGCGGAGGCGGAGGCGGGCGCTCCGTCGGTGGCGCTGCAACCGACGACGTCGTCGGTAAAGCGGCTGCCGCCGGTGCTGATGAACTACGAGTGGATGTTGCAGGAGGTGCAGCGCAAGTCGATGGTGATGAAGAGCACGTTCATGGTGATGCCGAGCACGAGCGGTGCGATGGAAGCGGTGGCGGGTACGAGCGGCACGAGCGGTACGACGGGCGGGGGCGagctggtggtgccggtggagcaGAAACCGGAGCTGGTGCTGGCGCGTCTCCCGGGCgccgccgacggtggtggtgggccgaGCGGTCCGTTCCTGGGTGGCGCCGGGCGCAATCGCAGCTACCAGTGCAGCACGTGCCTCCAGCAGTTCGAGCGGTTCAACCTGTTCAACGAGCACCTGGTGGAGCACCCGGTGACGTGCGGTTCGTGCGGCCGGCAGTTCAAGCAGTGGCGCAACTTCTCGCTCCACGTGAAGCGCCACCTCGGCATCAAGGAGCACGAGTGCCGCACGTGCGGCAAGCAGTTCGTCATCAAGCAGAAGCTGATCGAGCACATGCGCGTGCACAGCGGGTACGCGCCGATCAAGTGCAAGCAGTGTAACCGGTCGTTCAAGCGCTTCTCGAACCTCGCCCAGCACCGGAAGCGCAACCACCAGAATCGCGCCGCCGCGAAGGAGGACTACGTGTGCCAGCAGTGCGGCGAGGTGTTCCACAGCGTCGCGAAGATGGAGTGGCACAAGGAGACGCACGAGAAGAAGCCGAAGGCGTGCCCGTACTGCCGGGAGAAGTTCATCCACCGCAACAGCCTAACGCGCCACATCCGGCTGTCGCACACGGACAAGTACGCGCAGCTGGAGGAGACGCGCACCGAACCGTGCACGATCTGCCAGCAGCCGTACACGAAGACGAGCATGCGGCGGCACCTCGAGACGCACACCAAGGAGCGGATGGCGTACGCGTGCAGCATCTGCAACAAGCGGTTCACCACCAACTGGAACCTGAAGCAGCACAAGTGGACGCACGCGAACCCGACGCTCAAGCCGTTCCAGTGCTCGCACTGCCCGAGCGCGTTCGTGCGCGAGTCCGACTACGTGACGCACACGAACCACAACAAGCACGTGCGCATCCATCACGCGCGCGATCCGCTCACGGCGGAGGGCTAA
- Protein Sequence
- MNLAEHLDTHPKEKVISALVKSWLLTKNGPPSEVIEIGGGEELPPVVAPKTTTSTTVVLTDSPPGSSRPMSSGYEPAQSIYLDGAGSTSALLGNPPAMAAPIVVKTMNAYGVPGFQLNNVTFFKEPVPVAATVTITSSSSEEDFAAEPQPGTSSGRGATAGSTAAIYPRYTNELYSGPPPPYSRAVTSTVTTNTTHIVPVSQPQAMFQHSKATTISEPVSKPASYDGGETGFKTEQSFASGPATTSNTVSPTVSATSTVSTSPSSVNSTPPKANIVQVLSDVKLQSDIKDFQDIITHLNAGKMAIKFEVPDVPHVCEEECEDYGETGVEWQEEEELDEDGVAGEEVQAAEQQIEQEQEEEEWQEMKFTPAVGEMESAAATPPKTSAMMTSVIQKTPQTPPAPPAASAPDASKMVKIVLSLPATTKSSTMANGQQSQPPQANNSTGGKQSRQSHGRFPTPKKLVIKPLQPVLQQHHQPAHQQQQQQQQFDLDATALSTLAEVVCTTAAQQQQPGGESATAAVIQKTSPIKREAMRQAVGGEIRPYEIDVGAYNISYVGEAGETHYYPLPKNEEEIILVSDGGSGNGSDGGSGNGSDSDAQLVPVEAVLDDGSPDQLEELVLEERAEEMEVPMETIDVDAEEEEESKPIDIDEEYEEEEEEEDEEEDMDEEDEEEEEEEDLEEEDDEDEDDEEEEEEEEDDEDGEEDEQGEEDGEGEQSERMGGVVGMRAPKVRSGSVPPYNERSGKQQQQQHAEYAASRANEGTVAPPKTLHGHTVARKRSVTMIDADDEDEKDGRHRYANTQASKIAQHVRTVPLEVTAMEGKDRDELEAGPSSSSSASGDANGPPRPKIRITSAPGSYWHGKQTPAASASGEEVAAPVTAKVERDDPVPSAGEGGTFVYEEDTSGASCSSAATFLRKRGVAIAVVTPSASATTVSTAGTGGVSGGEGEGTGAHEEAAAKASASCSQHSNSSSSMYSSNATVTTSSCSSAASLLMERAASTESLNIRTDEKMPAKGEISEQESNGDMDVTSWNQRLYAVGDNMPIYPSSYDLSTAQECWNLSSRTQSMFAGNNVQFYYTPPEQAQFGSGNSGQIPLTRVAFQFAATSTTLHQQQGGPHMQQQHQPLGIAPEQLPMGGIGIIATAGKIEPQQQDLALLEQHQQQQDNDIDTDTADMDETTRNRLMKSTLQNMIVQEDGAPQQQQEQEQEQQQSVLPMCETKYEETGHSSTASFFGLCDKVNVLMMAEGGGNGGSAVQRAQKPSGSGVSRTYRCAHCPKAFGSIKLRRVHQQSVHADEMRQMLMSFAASGAACGGGSEMVEAEAEAGAPSVALQPTTSSVKRLPPVLMNYEWMLQEVQRKSMVMKSTFMVMPSTSGAMEAVAGTSGTSGTTGGGELVVPVEQKPELVLARLPGAADGGGGPSGPFLGGAGRNRSYQCSTCLQQFERFNLFNEHLVEHPVTCGSCGRQFKQWRNFSLHVKRHLGIKEHECRTCGKQFVIKQKLIEHMRVHSGYAPIKCKQCNRSFKRFSNLAQHRKRNHQNRAAAKEDYVCQQCGEVFHSVAKMEWHKETHEKKPKACPYCREKFIHRNSLTRHIRLSHTDKYAQLEETRTEPCTICQQPYTKTSMRRHLETHTKERMAYACSICNKRFTTNWNLKQHKWTHANPTLKPFQCSHCPSAFVRESDYVTHTNHNKHVRIHHARDPLTAEG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -