Akol003137.1
Basic Information
- Insect
- Anopheles koliensis
- Gene Symbol
- -
- Assembly
- GCA_000956275.1
- Location
- JXXB01000075.1:271-1975[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 3.7e-06 0.00032 21.0 2.1 1 23 192 215 192 215 0.98 2 12 3.3e-06 0.00028 21.1 1.1 1 23 222 244 222 244 0.98 3 12 0.017 1.5 9.5 0.6 2 23 248 268 248 268 0.94 4 12 0.0022 0.18 12.3 3.1 1 23 272 295 272 295 0.95 5 12 8.5e-06 0.00073 19.8 3.8 2 23 305 326 305 326 0.98 6 12 0.14 12 6.5 1.2 2 23 330 350 329 350 0.92 7 12 0.17 15 6.3 0.1 2 23 355 377 355 377 0.92 8 12 0.00081 0.069 13.6 0.8 3 23 391 412 389 412 0.90 9 12 0.044 3.7 8.2 0.0 2 23 416 436 416 436 0.95 10 12 1.8e-05 0.0015 18.8 0.5 2 23 442 464 441 464 0.94 11 12 1.1e-05 0.00091 19.5 1.9 1 20 476 495 476 497 0.94 12 12 0.16 14 6.4 0.5 2 21 502 520 501 521 0.91
Sequence Information
- Coding Sequence
- ATGAGTAATACACGGTGTCGTCTATGTTTGGCAATGGTAGATGATAGTGATTGCTCCACGGTAATGGAAGTCATGTTTCGCCAGGCAATAGAGCGCGTTTTTTCATTCGAGATATTGGCGACGAAAGGCCTGCCAACGAGCGTCTGTCGTGAATGTGCAACGTACGTTTGGGAATTTCATTTATTCAGTGCTATGGTTGAAAGTAACCAAAATTTGCTGCTAACAGAGCATTCTCAGAAGCTGGGAACGAAAATCATCCAGAATACAAATGCACTCGAATATGTTTCCGTTGATAATGTCCATGTAGAGGCTTTAACAGACGACCACGATACAGAAGAGATACATGAACAAAGTAAGCTGGAACTCGTGGATGAGAAGGATTGTGAAGAACAATGCCCAGCTGGTGCGGATGAAATTGATGTCGAAGAAGTTGTAGGAGAAGACGCGATCATAGCACTCGATAATGGTGCATCTGCAGACGAAGAAACAGGAACGCAAGAAATGGCTCCAGAAGAAAGAGTACACCCTACAAGATCTGGCCGAGTGCCGAAGAAAAGTAATCTAGCAGGCGCATACCGGTGCGACAAGTGTGATGAGTCGTTCAAGCTGAAAAAGGAtttgaaacaacacacacaaaccgaacATGACTCTAGCAAATTACCCTTTCCGTGCGACCAATGTGAGAAGTCGTATCGGACGAAAATGCAGCTTCGAGAACATCTACGGTTGCATAAACGTGAAAAGTGCCCGGTGTGcgacaaaacaatcatctcCAGACATTTGAAGTCCCATATGGCTGCCCATGATGGAGCGTTTCGCTGTGACGTGTGCGATCGGTGCGTTTCAAGTGCACACTTTCTAATCCAGCACAAACAACTGATGCATCCACCGGAAGGGGcatcgaaaacggaaaaatgtgAGCACTGTGAGCGAACGTTTTACACCAAATATCAGCTATCGACGCACCTGCGCATTCACCGGAAGGTGACGTGCAAAATTTGTAGCAAAGTAGTTAAGAAGCACCTGTTTAAGGACCATCTTGCCGGACATCGCGGTGAAAATCGCTGTGAGGTGTGTGGTATTGCGCTTTTGTCGCGTGACTCGCTGCGATCGCACCTTGCTTTAAAACATCCGGCAACCACAGATCTGCCGCCGGACGAGCGCTTGGCTTGCGACCAGTGCGACGAACGGTTCTACAACAGGGCACAGCTAAAGTACCATCGTTTCCTTCGGCACGCGGTCCGACAGTGTGGAGTTTGTAACAAAACGGTTAGAGCTAGCGCATACGCATCACATATCTCTGCACACCGGCCTGCGTTGGTGCGTTGCGAAGTGTGCGGTAAAAACTATTCGTccataaaaaatttaaaaagacaCAAAGAAAGTGTGCATCCAACTACTGATCCGGAGGCGAACAAAACTTCCTTCCCGTGCACTCATTGCGATAAAACGTTTTACAATCGCACACAGCTTACGATACATCTGTACAGGGTCGAAAAGGTACCGTGTCCACTGTGTAAGAAAATTGTGAACAGATGTAGTTTGAAGGAACACATGACGAAATGCCCTGACGGTTACGTTGGGACGGCGGAGCATTCTAGCAATCGCGGAGACTCAAATAACGATACTTCAGAATGA
- Protein Sequence
- MSNTRCRLCLAMVDDSDCSTVMEVMFRQAIERVFSFEILATKGLPTSVCRECATYVWEFHLFSAMVESNQNLLLTEHSQKLGTKIIQNTNALEYVSVDNVHVEALTDDHDTEEIHEQSKLELVDEKDCEEQCPAGADEIDVEEVVGEDAIIALDNGASADEETGTQEMAPEERVHPTRSGRVPKKSNLAGAYRCDKCDESFKLKKDLKQHTQTEHDSSKLPFPCDQCEKSYRTKMQLREHLRLHKREKCPVCDKTIISRHLKSHMAAHDGAFRCDVCDRCVSSAHFLIQHKQLMHPPEGASKTEKCEHCERTFYTKYQLSTHLRIHRKVTCKICSKVVKKHLFKDHLAGHRGENRCEVCGIALLSRDSLRSHLALKHPATTDLPPDERLACDQCDERFYNRAQLKYHRFLRHAVRQCGVCNKTVRASAYASHISAHRPALVRCEVCGKNYSSIKNLKRHKESVHPTTDPEANKTSFPCTHCDKTFYNRTQLTIHLYRVEKVPCPLCKKIVNRCSLKEHMTKCPDGYVGTAEHSSNRGDSNNDTSE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -