Akol003906.1
Basic Information
- Insect
- Anopheles koliensis
- Gene Symbol
- -
- Assembly
- GCA_000956275.1
- Location
- JXXB01017501.1:1935-4052[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 3.8e-05 0.0033 17.8 0.5 2 22 279 299 278 299 0.95 2 13 0.0088 0.75 10.4 1.3 3 20 306 323 304 326 0.92 3 13 0.68 58 4.4 1.8 1 23 332 355 332 355 0.93 4 13 0.0034 0.29 11.6 0.8 1 21 367 387 367 388 0.95 5 13 0.0068 0.58 10.7 0.6 1 23 392 415 392 415 0.97 6 13 0.05 4.2 8.0 0.2 3 23 427 448 425 448 0.91 7 13 0.013 1.1 9.9 1.3 1 21 464 484 464 485 0.93 8 13 3.2e-06 0.00028 21.2 0.4 1 23 492 514 492 514 0.98 9 13 3.5e-06 0.0003 21.1 2.0 1 23 520 542 520 542 0.98 10 13 1.5e-06 0.00013 22.2 0.3 2 23 550 571 549 571 0.96 11 13 6.1e-05 0.0052 17.2 1.4 1 23 577 599 577 599 0.98 12 13 6.6e-08 5.7e-06 26.5 1.2 1 23 605 627 605 627 0.99 13 13 8.2e-06 0.0007 19.9 1.8 1 23 636 659 636 659 0.98
Sequence Information
- Coding Sequence
- ATGGACAACATCCTGATCGAACCGGACTGCTACAAAGTGTGCCGGATCTGCATGGAAAGCTGCGAGGATGAtttcgtgtgcgtgtacgaCGAATTCGAGGATGTGCTGCTCAGCGAAGTGATCAAGGAGTGTGCCCGGGTTGAGATCCGCAAGAACGATGCGTTGCCACGGAACGCCTGCCGGAACTGTGCCGAGTACATGATCATCGCGTACCACATCATCCAGAAGTGCCGCGAGTCGGATGTGACGCTGCGATCCATCTTTAAGCATGAGCTTAATTTGCATCGCGAAGAGAAGCAAGCTGCGGGGGCTTTGCGAGCCGACGACATGGACCCGGCTGGGTACGAATTTTTGCTCGCAAACGGGTACGACGTGATGATGCTGGACGATGACGGTATGCTCCTGGAGAATGCAAACGCGCAATGTGATTTTGCTACCCATtctgaggaggaggagaagacGCCGGACGAGGGTTCGTATGgggaaacagcagcagcccaccAGCAGATGCCGCCGTTGGAACAGCCAAAGCAATATCAAAAAGAACCCGAGGAACCGCCGAACGGTTCACAACCCATCAGTAAACACGATTCAGCCAGCGAAGAGATCGATCTAATTCTCGAGTATGAAAAGCAAACGTTTGCCCAAAGAATGAGCAGAGCCGTAAACGAAACGACTCACGAgtcaagcgaaacgaacgaagagGATCCTGCCGAAAGTAAACAGATAAAGTGTTGCGGGTGCAAGAAACTGTTCGACTGCGAACAAACCCTAATGGAGCACTGCCAAACCGTTCATCTACCCGTAGAGGGAACAGACTCGGGCAAACCGATCCGTTGTCCGGTTTGTTTCAAGCAATTTAGCACCCAACAGCTGCTCAAAGAGCATCAACGATCGGCGAATCGCAAGTACGGCTGTGCGCAGTGTGGCAAACGCTTCATGACGCAGGCAAATCTGGACGTGCACAGCAAGTGCCACAAGAACACGGAAACGTACAAATGTTGCGGCTGTCGGGTGGATTTTGACCACGAGCTGGATCTGCTCGTCCACTCGCAGCAAGTGCACCGACCGGAACGGACGATCGACGCTGAAAAGCCCTTCGAATGTGACACCTGCTATCGGCGCTACCCGACCCGTAAATCGCTTGCCACGCACAAGCGTCTGATCAAGCAGTACCAGTGCCAACAGTGCGGTGCCATTTTCATGAAGCAACTCTTCCTCAAGCTTCACCTCGAGCGGTCCCACCAGCAGGAGGTGGTCGAACGTCGGCGCCGGTGTTGCGGCGGGTGTCGGGAAGAGTTCGAAGATGCCGCGGCACTTCGCGAACACTCCGAACGGGTTCACGCCAAACCCACCGACGGGTCGGACGGGACGGACGACGGTAAACCGTACGAGTGTACCGTGTGCCGGAAGCGTTTCAGTTCCGTGTTCTTCATGCTTCAGCATCAGCAGAAAGTGTACCGGGAAAAGTGCTACCCCTGCACGATATGTGGCCGATCGTTCGGGCGTGCCCATGACCTAGCCAACCACGAGACGACCCACTCGACGGAGATGCCGTTCGAGTGTAGCGTTTGCGGACGTCGGTTCAAGAACAAGCTGTATCTGAAGAATCACCTCAAACTGCACACGATCGTCGCGAAAGATCAGGTGTGCGTCGAGTGTGGGAAAGCGTTCCGCACGAAGGATCTGCTCAAGACGCACCTAATCAGTCACTCGCAGGAGCGCAAGTACGCCTGTACCGTCTGTCCGGCCACGTTTAAGCGTCTGCAGTGTCTTAAGATTCACACGCGCGTACATACGCGCGAAAAGGCGTACGAGTGCGGCGTGTGCCGGAAGCGGTACGTACAATCGTCCGACCTAAAGCGTCACATGCGCACACACAATCCCGGTGACGAAGGCAAACCGTTCCAGTGCGAGTACTGTCTGCGGCGCTATCCACGCAAGGACTATCTGAAGGTGCACATCCGGAAGCAGCATCTGGAAAAGACGGGTGGAGAAGGGGCGGCCGGACAGCACGGCTTCGGACAGCAGTTGGTGAGTATAGGTGGAGGAGATGAAAATAAGTTCGAGCGAGACGGCTCGCCTCCGAATGGGTACAGTGATTTCATGGACAGTTAA
- Protein Sequence
- MDNILIEPDCYKVCRICMESCEDDFVCVYDEFEDVLLSEVIKECARVEIRKNDALPRNACRNCAEYMIIAYHIIQKCRESDVTLRSIFKHELNLHREEKQAAGALRADDMDPAGYEFLLANGYDVMMLDDDGMLLENANAQCDFATHSEEEEKTPDEGSYGETAAAHQQMPPLEQPKQYQKEPEEPPNGSQPISKHDSASEEIDLILEYEKQTFAQRMSRAVNETTHESSETNEEDPAESKQIKCCGCKKLFDCEQTLMEHCQTVHLPVEGTDSGKPIRCPVCFKQFSTQQLLKEHQRSANRKYGCAQCGKRFMTQANLDVHSKCHKNTETYKCCGCRVDFDHELDLLVHSQQVHRPERTIDAEKPFECDTCYRRYPTRKSLATHKRLIKQYQCQQCGAIFMKQLFLKLHLERSHQQEVVERRRRCCGGCREEFEDAAALREHSERVHAKPTDGSDGTDDGKPYECTVCRKRFSSVFFMLQHQQKVYREKCYPCTICGRSFGRAHDLANHETTHSTEMPFECSVCGRRFKNKLYLKNHLKLHTIVAKDQVCVECGKAFRTKDLLKTHLISHSQERKYACTVCPATFKRLQCLKIHTRVHTREKAYECGVCRKRYVQSSDLKRHMRTHNPGDEGKPFQCEYCLRRYPRKDYLKVHIRKQHLEKTGGEGAAGQHGFGQQLVSIGGGDENKFERDGSPPNGYSDFMDS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00100457;
- 90% Identity
- iTF_00100457;
- 80% Identity
- -