Agam007931.1
Basic Information
- Insect
- Anopheles gambiae
- Gene Symbol
- -
- Assembly
- GCF_000005575.2
- Location
- NT:32356510-32358156[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 0.24 3.7e+02 0.4 0.0 3 14 243 254 242 257 0.88 2 4 1.5e-07 0.00023 20.3 0.2 4 36 308 341 306 344 0.88 3 4 0.00014 0.22 10.8 0.0 21 42 374 395 361 397 0.85 4 4 9e-13 1.4e-09 37.0 0.0 4 38 417 451 415 456 0.94
Sequence Information
- Coding Sequence
- ATGTCCTGCACCTTTTCACAGCAAATGGCGAACAGCTCCTGCTTGACGTGGCTCAACTTTCGCGAGCACATGCTAAACACCTTCTGCGGAATCTACCGCACGCAGCAGCACACCGATTGCCGCTTAATCGTACCCGACGGTGAGCTGTACGCGAACCGTCCGATCCTGTGCATGGCATCCAGCTTCCTGGAGACGATTCTGGACGGTCTGCCTACCATCGGTGCGGATATGGTAACGATTGTAATACCGGACTTGACGCTAGCGACGTTACGCGCCGTCCTGCAGTTCATTTACACCGGGGAGGCAAGCGTACGGTCGGACGAAATGGCATCGTTTGTGGAGGCCTGCAGCTTTCTGCAGCTACGCGGAGTGCGTTTTATCGCGAATCAGATTGTGGGCATACGATTCGGCAAGACTGTTGGTATGGTGTCGGAGGAGCTTATTCCTGCCAGCGAAGGTTTGGAAGAGACGGCATGCCCAAGGGAAGAACTGTTCGTAGCGCAAGTGGAGGACCAGGCAGAAGAGgatgaggaagaggaggaacaAACAGAAATGCCCATAACACAATCACAGGTCCAACCTGTTGAATGCTTCATTCCAGAATCGAGCGAATCAGTCCAAGAACACGTTGAAAGTAATGAAATTGTTCAAGTTGTGTTGAATATCCCATCAGACGCGACTCCTGCCTGCGAACGGGAAACCTCTCAATGTGTAGAAATTCCACAGGAACGGTTAACGCAAGCAATTGAAGCAATTATAAAGGACCACGAAAGCTATGAAATCACATCCGTTCCATGTGCAATCGACACCACCGTCCCCACCCCGTCGGAAACAAATACAACGAACCGTCCGCCGTTCGAAGATGAGCTGGAACAAGCAAACCCCGAACCACCACTATCCGACCCTGCCAGTTACGATGCACGTCTTGCGTTAGCGATGGATGCAATCCTTCACCACGGCATTAGCTACCGGATTGCCGCCAGGCAGTACAGCATCGCCAAAACGGTACTGTGGCGCAAGGCGATGAAAATGCCGCGACCGGTTCGGGCCGGCTCCCCGAAGCTGAGCGCTCAACGGCGGGAAGCGATCGATGCACTGAAAACGGGCGAGAAGCTCGCACACGTGAGCCGACGGTTCGAGATTCCGCTGTCGACGCTGCACCGGGAAAAGCAACGGCTGTACAGCAAGGGCGCACTGCCGAGCAATGTGTCGCTGAAGCTGCGCGGTAAGGATGAGTCGGTGCGGAAGCGGTTGCAGGAGGCGGTGGGTGACTGTGTGGCGGGCAGGATGTCACTGTCCGAGGCAGCCCGGACATACGGCCTACCGAAGACGTCCATCTGGCGCAGGGTACGATCGCTACAGACCAGTGGCTGCAGTAGTAGCGGAATGAACGAGGAGAATTCTGCAAGCGACGCAATGGCAGAGCGACCGAATCAATCGGAAGAGGctgaggtggaggaggaggaggaggaggaggatgatgatgctaaGCTAACGATGGGCGGCATCCTGTTAAGGGGGAGTGATACGCTTCAGGTTGGGGCAGGATATATGTCCGATGAGAATATTTCGGCGAGCGATTTAGCGCAGTTAAGGTATCAGCTGACCTCGAACTATGACGATCACGTATTGAATGATAGTTtataa
- Protein Sequence
- MSCTFSQQMANSSCLTWLNFREHMLNTFCGIYRTQQHTDCRLIVPDGELYANRPILCMASSFLETILDGLPTIGADMVTIVIPDLTLATLRAVLQFIYTGEASVRSDEMASFVEACSFLQLRGVRFIANQIVGIRFGKTVGMVSEELIPASEGLEETACPREELFVAQVEDQAEEDEEEEEQTEMPITQSQVQPVECFIPESSESVQEHVESNEIVQVVLNIPSDATPACERETSQCVEIPQERLTQAIEAIIKDHESYEITSVPCAIDTTVPTPSETNTTNRPPFEDELEQANPEPPLSDPASYDARLALAMDAILHHGISYRIAARQYSIAKTVLWRKAMKMPRPVRAGSPKLSAQRREAIDALKTGEKLAHVSRRFEIPLSTLHREKQRLYSKGALPSNVSLKLRGKDESVRKRLQEAVGDCVAGRMSLSEAARTYGLPKTSIWRRVRSLQTSGCSSSGMNEENSASDAMAERPNQSEEAEVEEEEEEEDDDAKLTMGGILLRGSDTLQVGAGYMSDENISASDLAQLRYQLTSNYDDHVLNDSL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00102480;
- 90% Identity
- iTF_00102480;
- 80% Identity
- iTF_00102480;