Afun003108.1
Basic Information
- Insect
- Anopheles funestus
- Gene Symbol
- -
- Assembly
- None
- Location
- Contig1:28675400-28678992[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 7.1 4.3e+02 1.4 0.7 8 23 391 407 384 407 0.79 2 9 3.6 2.2e+02 2.4 1.5 1 16 419 434 419 436 0.83 3 9 4.9e-05 0.003 17.7 0.2 1 23 447 470 447 470 0.95 4 9 2.6e-06 0.00016 21.7 0.7 1 23 476 498 476 498 0.98 5 9 0.00076 0.046 13.9 1.2 1 23 503 525 503 525 0.99 6 9 0.00013 0.0077 16.4 1.0 3 23 533 553 531 553 0.97 7 9 0.0014 0.085 13.1 1.6 2 23 560 581 559 581 0.94 8 9 4.4e-06 0.00026 21.0 1.5 1 23 587 610 587 610 0.98 9 9 5.6e-06 0.00034 20.6 1.2 1 23 616 639 616 639 0.97
Sequence Information
- Coding Sequence
- ATGGACCTCTCGTCGATCTATCTAGTGGAAAATTTAAGCAACTACAATTTTGAGGATGTCGTCTTTCTTGCCGCTGATATCAATTCAATAGTGGAAGCCCTAATGCAACCGATAGTGTTGAAGGATGCAGAGAAAGTACTGTTTTTGGGAAAGCTGTTGAAAACCGTTCTACACATTTGCCGAACAATCGTCTGCAACTACACAACGTTGGAGGAGCTGCTGAAGGTAAACTGGAACACGTCGAAGAACTACAATCAAAAGTGGCAATTTTTCGAGAAATTAATGCTGGAAGATCCTGTACATGTTATCGCTAGAAGAATACTGCTTTCGAAGGATGGTGAGCAATGTTTAGGGGTCATGCAGGAATTTTACCGACTGCATTACTCTAAGGAAGTTTTCAAGGAAATGTTACTCAGCGTCCAAAAAGTAGTTCCATCGGTCGCCTCGCTTTGTGCATTTCAAAGACTGATAAGTACAATATCTGGGTCGGAAATAACGAGCGGATCTACCCCGCACACGGACGAAATAAACATTGTTGCATTGGCGAATCATACGAACACAAATGGTTTCAAGAAAGTGGCTGAAAATCTACAAGAAAAAATGAACGGATCTGACAACGAAGAACTACTGAAATTACAGATGCAATTGTTAAAATCGCTGTTCACAGACACAATACTAATGGAACGCTATCAGGAAGCGTTGAGAAATGATTCGTACTATCAACTGAACATGGCAGTTTTGAAACTCTATCATGACCACCTGTTGTCCAAAAATATTCTGGCGCAAAATGAAATTCCAAAAGTTGATTATTTTCCAACGGCTGGGAAAACATCGGAAGATGATTATGAGATTGAACCGGAAAATGATGTTACGGAGAAAACATACTACGAAGAAGAAGCCAAACCAACAACACAACGACTGTTAGCCACCAGCACTGAGTTGGAGAATCATGAAGAATCTGATTACGATCTGTACGATGTTGTTGAGGACGTCGGAATAGTAGAAAATGTTGCATCCGACTACAATGAAAGCGGCGTGTCGCTTGAGGGAGACATTGAAGCTACAGACTCCAGGGAAAACTCACCGAAAACAGCTGACGGAATGGATGAAGCTGCACCAGAAGATAATCCAATGGTTTGTCTCATTATCAGCTGTTGTGGCTGTACTGGATCACAATTCACTTCAGTGAAGGATTTAAAGCAACATCGGCTTGAAGTGCACAAGAAGAAAAACATCTCGAATTCCTTAAAGATCCATCATTGTGACATTTGCTTTGAACCCTTCTGCAAAAATATTAAACTATTGAAAGCGGAAGCTGCGCTGGAAGCAAAGGAAAGATACGTCTGTACCATTTGTGGCGCCAGCTACAGTAGTCGAGCGGCTTTGCAAAGTCACAACAATAGTAAACACTTGCGCAAGCGAAAGTACGCGTGTGATGTCTGCCAGAAAGCCTTCTACACCTCTAGTACGTTGATATCACATCGGCAAACACATGGCAAGAAGAAATACCAGTGCACCGTATGCTCGAAAATGTTTCTTCGCCGCTGGGACATGTTGAGCCATCAGAATACGCATTCCAACGAACGGCCGTACGGTTGCAGCGTGTGCGACATGCGTTTCAAGTCTTCGGCTCACCTGCGGGGCCACCAATCAGTCCATACGGGCGAACGGTCGAAGAAATGTCGAAAATGTGGGAAAGGATTCCGCACGTACAGCGATCGGCGGGTGCATGAGCTGGAACATGAAAACATCCATCCCTTCAAGTGTGACTTTTGCGATAAAAAGTATGGCCGGAATTACAAGCTGCAGGTGCACATACGGATGGTGCACACCGGCGAGCAGCCGTTCGCGTGTACCGATTGTTCGAAACGATTCTTCCAGCGGTGGGAACTGACGGCCCATCGGCGGACGGATCATGGCGATATAACGGAAATCGAATACATCCTAAAGCACCAGAAGAAACTTAAGTACACCTACTATCCGGTGCGGCCAACGAAACCTGCTCGCACGATGGACACTCATCGCTTCAGTCCAGATGCTTCCGAGACGGTGAAACCCCGCACGCACATCGTGTGCGTTGTCAGTACGGACCGGGATTTGTAA
- Protein Sequence
- MDLSSIYLVENLSNYNFEDVVFLAADINSIVEALMQPIVLKDAEKVLFLGKLLKTVLHICRTIVCNYTTLEELLKVNWNTSKNYNQKWQFFEKLMLEDPVHVIARRILLSKDGEQCLGVMQEFYRLHYSKEVFKEMLLSVQKVVPSVASLCAFQRLISTISGSEITSGSTPHTDEINIVALANHTNTNGFKKVAENLQEKMNGSDNEELLKLQMQLLKSLFTDTILMERYQEALRNDSYYQLNMAVLKLYHDHLLSKNILAQNEIPKVDYFPTAGKTSEDDYEIEPENDVTEKTYYEEEAKPTTQRLLATSTELENHEESDYDLYDVVEDVGIVENVASDYNESGVSLEGDIEATDSRENSPKTADGMDEAAPEDNPMVCLIISCCGCTGSQFTSVKDLKQHRLEVHKKKNISNSLKIHHCDICFEPFCKNIKLLKAEAALEAKERYVCTICGASYSSRAALQSHNNSKHLRKRKYACDVCQKAFYTSSTLISHRQTHGKKKYQCTVCSKMFLRRWDMLSHQNTHSNERPYGCSVCDMRFKSSAHLRGHQSVHTGERSKKCRKCGKGFRTYSDRRVHELEHENIHPFKCDFCDKKYGRNYKLQVHIRMVHTGEQPFACTDCSKRFFQRWELTAHRRTDHGDITEIEYILKHQKKLKYTYYPVRPTKPARTMDTHRFSPDASETVKPRTHIVCVVSTDRDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -