Afun005730.1
Basic Information
- Insect
- Anopheles funestus
- Gene Symbol
- -
- Assembly
- None
- Location
- Contig1:16767881-16770382[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 2.1 1.3e+02 3.1 0.1 2 23 247 269 246 269 0.94 2 12 0.0079 0.48 10.7 0.9 1 20 301 320 301 322 0.93 3 12 0.002 0.12 12.6 0.4 1 23 326 348 326 348 0.98 4 12 3.7e-06 0.00022 21.2 2.1 2 21 357 376 356 377 0.95 5 12 5.1e-05 0.0031 17.6 1.7 2 23 416 438 415 438 0.93 6 12 0.0044 0.27 11.5 1.0 1 23 446 468 446 468 0.94 7 12 0.00021 0.013 15.7 1.1 2 23 487 509 486 509 0.92 8 12 9.5e-05 0.0058 16.8 2.6 1 23 516 539 516 539 0.94 9 12 0.0016 0.094 13.0 3.4 1 23 546 568 546 568 0.97 10 12 1.5e-05 0.0009 19.3 3.4 1 23 574 596 574 596 0.98 11 12 1.1e-05 0.00069 19.7 1.6 1 23 602 624 602 624 0.97 12 12 0.0004 0.025 14.8 0.2 2 23 631 653 630 653 0.92
Sequence Information
- Coding Sequence
- ATGCATCCAGAAGTTGGTCAAACATACGAATTATCGAACCTAACGTGTCGATTGTGCTTAGGAAACAAGGAAGAATTAGAGCCGCTCGATGCTGCTTTGACGCAAAACGAGCTGGTCAACGTCATCGGTGGCTTGTTCAAGATAGATCTGGAAGAAAATTGGCCATTCCACAACGCATGCATCAAATGCATTAAGGATGTTCGCGTAATTGAAAGTATTCGAGCAGAGATCTATGGAAAAAATCGAATATTCGATGTGCTTTGGACACAATACAAGCGAATCCATTTACAAGATGACTCGACTAACAATGGCAAAGATTATGCATCGAAGGAAAACGATAATAGCATGCCCGCCGAGTATGTCATTGAAGAATTGGTTGTGGAGAAGACGGAGATGGATATGCTGCAGCCGGATATGTTATTGAAAGAGGAAAACAATCAACAGGACATAATTGTTAAGCTGGAAAATCAGGATGAGGATGATCCCGTACAGGAGGAGCTGGTATGTGAAGAGATGACACTGAGCGAAAGTGATCTCGATATGGATGCGATTATCGAAGAAGAGAAGGATGAAATGAACGATACGAATGAGGGCAACATGATTGAAGAACTCATGGAGGAACAGGATGATAATGTAGCAGACGCCGACTCGGAACACCATGGCGACGATTTGTACGAGGTTGTTGACGAAGAAGACGGTTCACCGGATGGTGAAGGCTATTTCGATGCTACGATCATTCGCTGCTACATTTGCATGGAATCGCTAGAATCGGAAAACACACTGGAAGAACATTTGACCATGATACACCAGGATTTGTTACCATTCCATTGCGACAAATGTCTGCTGCATTTTTACTGCTTGAACGAGGTGAATCAGCATCTGATCACGCACGTCTATCCATTCGTGTGTCTGTACTGCCCACAGAAGTACTGCAACGAGGGGCTATTGCGCAATCACAATAAGGTTTGCAATTCGTACCGCTGCGTGATATGTCCGGCCGAGTTCGCCATTAAGGCACATCTGAACGAACACAAGAAGCAACATACGGCAGAGATGCGGAAAATGAATAAATGTAAGCATTGTGGACGTACGTTTGCCCATGCGAGCAAATTAAGACGCCACTTGCAAGCGGGTATCTGTACCGGTTCTAAGGATGTACAAGTACGGAGCAATACACGCAAACGGACACTGGAAGGAAAGTCGTCTCCTGGCGCAACAAAGAGCAATATAACTAAAAATCTGCTCGTATGTCAGGTGTGCAATAGGAAGTTTGATAATAACTCTCATCTGGCGCGTCACTTCGAGCGTGACCATTCAGAGTTTAGGCTTCCCCTCTTTCCATGCAACGTTTGTCCGAAAAAGTTTACCTCGTTCGAAAAAAGCATACGCCATCAGGCGTATCATCGCCGTTCGACGGTAAAACCGACGGAAGCGAAAAAGTCGAAAGAATCGGACACTGTGTGCAAAATTTGTAACAAAGTGTTTCGCGTCGATCATCAGCTCCTTCGCCATCTCACCGAGGATCATTCGCTCACGCTCGAACTGTTCGAGTGCGATCAATGTCCGCGTAAATTTTCGACCGAATTCAAGTTACGCAAGCATCAGTACAATAGCCATCGGGAGAATAAACCACTGTTCGTGTGCTCACACTGTGGGCAAAAGTTTGAGAAGAAGCTTACGCTAAAGGACCATGAAACGAAGCACCTGGGGACACCGGCGTACAAATGTGACCTGTGCGATAAGACGTTCATACACAAGCACAGTCTCGATCGTCACGCGCTGGTTCATAGTGACGAGAAACAGTTTGCATGTGATTTCTGCTCCAAGACGTTCAAACGCAACACGACGTTGGTGATCCATCGGCGAATACACACCGGTGAAAAGCCGTATCTGTGTGAACCGTGCGGTATGCGGTTCATCGATTCCAGCACACTGATCAAGCACCGACAACGGGCCCACATGAAAACGGAATGA
- Protein Sequence
- MHPEVGQTYELSNLTCRLCLGNKEELEPLDAALTQNELVNVIGGLFKIDLEENWPFHNACIKCIKDVRVIESIRAEIYGKNRIFDVLWTQYKRIHLQDDSTNNGKDYASKENDNSMPAEYVIEELVVEKTEMDMLQPDMLLKEENNQQDIIVKLENQDEDDPVQEELVCEEMTLSESDLDMDAIIEEEKDEMNDTNEGNMIEELMEEQDDNVADADSEHHGDDLYEVVDEEDGSPDGEGYFDATIIRCYICMESLESENTLEEHLTMIHQDLLPFHCDKCLLHFYCLNEVNQHLITHVYPFVCLYCPQKYCNEGLLRNHNKVCNSYRCVICPAEFAIKAHLNEHKKQHTAEMRKMNKCKHCGRTFAHASKLRRHLQAGICTGSKDVQVRSNTRKRTLEGKSSPGATKSNITKNLLVCQVCNRKFDNNSHLARHFERDHSEFRLPLFPCNVCPKKFTSFEKSIRHQAYHRRSTVKPTEAKKSKESDTVCKICNKVFRVDHQLLRHLTEDHSLTLELFECDQCPRKFSTEFKLRKHQYNSHRENKPLFVCSHCGQKFEKKLTLKDHETKHLGTPAYKCDLCDKTFIHKHSLDRHALVHSDEKQFACDFCSKTFKRNTTLVIHRRIHTGEKPYLCEPCGMRFIDSSTLIKHRQRAHMKTE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00097943;
- 90% Identity
- -
- 80% Identity
- -