Afun007940.1
Basic Information
- Insect
- Anopheles funestus
- Gene Symbol
- -
- Assembly
- None
- Location
- Contig0:68368299-68373046[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.3 18 5.8 0.3 1 23 365 387 365 387 0.94 2 12 0.00041 0.025 14.8 0.4 5 23 403 421 401 421 0.96 3 12 7.2e-05 0.0044 17.2 0.8 2 23 430 451 429 451 0.96 4 12 1e-06 6.1e-05 23.0 1.0 1 23 457 479 457 479 0.99 5 12 1.9e-05 0.0011 19.0 1.4 1 23 486 508 486 508 0.98 6 12 5.9e-06 0.00036 20.6 1.7 1 23 514 536 514 536 0.95 7 12 1.7e-05 0.001 19.1 0.6 1 23 542 564 542 564 0.97 8 12 4.6e-06 0.00028 20.9 0.4 1 23 570 593 570 593 0.96 9 12 6.4e-05 0.0039 17.3 0.9 1 23 599 622 599 622 0.96 10 12 1.4e-05 0.00082 19.4 1.5 1 23 628 650 628 650 0.99 11 12 3.1e-05 0.0019 18.3 2.0 1 23 656 678 656 678 0.96 12 12 0.00023 0.014 15.6 0.2 1 22 684 705 684 708 0.92
Sequence Information
- Coding Sequence
- ATGAGTGGCCATGATCTTGCACATGAAGACGAGGTTCCTGTTGTCGATGGTGCACAGCTGTATTCCCATTGCTATTTGTGCCACACGCCGGTGGTTCACGATGAGTTTTGTCAACTATTTACCGAACCAGAGTTTTCCTCTCCGGCAAAGATACTTGGTGATGTGTTAGATATGGCGATATTGCCGGAACTGTGCCATTCGCTGATCATTTGTAAATATTGTAAAACGCTGTGCTCAGAATATCAATCGCTAATCGAACGGATGGAAACGATACATAGCCAAATTACGACAGCCTACAATCAAACCGTAATGAAGTTAACCGGCCTGACAGAGAAAGATATTAAGGATGGATTGGTGGCGGTGGAGTATGATGATAACCTCGAGACGGAGTTTCAGAATTTTAACAAAGAATTGATGTCAATGGAGGATGTATTTGGCGTGAGTGAACTAAACCCGGATGTAATACAAGTTGATCCGTCCACCGAACATTTGCAAGATGCGACTGCTGCTTTGCTTGGTCCCGATGAAGTGGTCGAGCACAGTGTGCAGTTTATAAATGATGATGAACATGCTACAACTCTACTACCGACCGATTCCGATGAGATGGTGGAAAACAGTCTCTGTCCGGAAGAATTGATCACAGAAGAAACTCTACAACGGTTTGTCATTGGTTCGGGTGAAACAATTGTTGAAGTAGACGCTGAAGATGGCACGTCAATTTATTGCGTCTATGGTGAAGGTATAGAAACGTTCAGCGAATCGCAAGAGCAACCCGAAACGGTGACTACAATGCTAAATAGCATAAGGGCGGCCAGCGTATCGGAAGGAGATGGTGTTGTATCTCAAGCAAGTGAAAGTGAAACGAATGAAATTGAGGAATCCGTATCCGTTACTTCACTGTTGTTAAACGAAGTAGATGCCGCTGGAGCAGGATCTCCATCACCATCCCAGGGAGACGATTTACGACCGTATTATATAAAGATAGAAAACTATTATTATTGCACACTCTGCCCATCGGACGAGACAACGGTTACCACAAGTGGCATAAAGCTGATGGCGGAACATTTGCAAGAAGCGCATAATCAACCATTACACACGTGCGAACTGTGTGATGCTATATTTTTCTTGCGTGCCGATTACGTAGAACACTTAGATCAGCATACGAAGGAAACAAAAACTGTGCAAGAAAATGAGCTAAACCCTGATCAGTGCGACACAACGTTCGTCAAGCAGCATGCACTTGAACAGCACCAAAAGACGCACCAGGCCGAGAAAAATAAGCGATGGAACTGTGAGCTATGTGACAAGAAGTACACGTCGAAAGCATTCTTTGAGGTGCACATGAACAAGCACGCCGGCATACGGCCGTACAAGTGTACCGTGTGCACGAAAGACTTCAGCTCCAAGTACGCACTGGCGGTTCATCTGAAAACGCACTACGCTCGTCCCCGTACGTTCGTTTGCAGCGAGTGCGGCAGTGCGTTTTACAGTCGGCACAATTTAGTACAGCACGAGCGGACCCATCGGGCCGAGCGGGAGTTTGAGTGTGGTGATTGTGGGAAGAAATTTTTCACCCAGCATAATTTGAACGTGCACAAGGTTATTCACAGCAGCAATAAGGCATTTGCTTGCCGGCAGTGTGGAAAAAAATTTGCAAGGAAAGCGGAAGTGCGAGACCACGAGCGTACCCATACAGGTGAGAAACCGTTTGTGTGCGATATGTGCGATTTAGCCTTTGCCCAACGTTCCAACCTTAACTCCCATAAGCGATTAACACATTTTAACGACAAGCGGTACAAATGCGACCTATGTGATGCTTCTTTCAAACGGCGAAGATTGCTTGTCTATCATACCAGAGCGATGCACACGGGTGAGCGACCGTACAAGTGCGATCTTTGTCCAGCTTCGTTCGTTTATCCGGAACACTTTCAAAAGCATAAACGCATACACACGGGCATTAAACCGTACGCGTGTGAGGTGTGCCATAAAACGTTCACCAGTCAGGATAATCGGAATGCGCATCGTTATGTCCATAGCGTGAAGAAACCGTACGAATGTGTTACGTGCGGTACTGGGTTTATGCGCAAAGCGCAACTGTACACACACATGCAGGAGATGGAACATTTGAATGATACGATCGTGGTGAATCAGCCGCGCATTAGTGCAAACAATTTGCTCGAGTTCGAAACGGAATCATTCGTGGTCGACGGTCAGACGGAGGATGGTGAGCAAACCCAGGAAGTGGAATGTTCGGACGATGAACAGCCACAGATAGCATTCATTAGCGTACCAGACTTTGATGATGGTGTGTCAGAAATGGAATAG
- Protein Sequence
- MSGHDLAHEDEVPVVDGAQLYSHCYLCHTPVVHDEFCQLFTEPEFSSPAKILGDVLDMAILPELCHSLIICKYCKTLCSEYQSLIERMETIHSQITTAYNQTVMKLTGLTEKDIKDGLVAVEYDDNLETEFQNFNKELMSMEDVFGVSELNPDVIQVDPSTEHLQDATAALLGPDEVVEHSVQFINDDEHATTLLPTDSDEMVENSLCPEELITEETLQRFVIGSGETIVEVDAEDGTSIYCVYGEGIETFSESQEQPETVTTMLNSIRAASVSEGDGVVSQASESETNEIEESVSVTSLLLNEVDAAGAGSPSPSQGDDLRPYYIKIENYYYCTLCPSDETTVTTSGIKLMAEHLQEAHNQPLHTCELCDAIFFLRADYVEHLDQHTKETKTVQENELNPDQCDTTFVKQHALEQHQKTHQAEKNKRWNCELCDKKYTSKAFFEVHMNKHAGIRPYKCTVCTKDFSSKYALAVHLKTHYARPRTFVCSECGSAFYSRHNLVQHERTHRAEREFECGDCGKKFFTQHNLNVHKVIHSSNKAFACRQCGKKFARKAEVRDHERTHTGEKPFVCDMCDLAFAQRSNLNSHKRLTHFNDKRYKCDLCDASFKRRRLLVYHTRAMHTGERPYKCDLCPASFVYPEHFQKHKRIHTGIKPYACEVCHKTFTSQDNRNAHRYVHSVKKPYECVTCGTGFMRKAQLYTHMQEMEHLNDTIVVNQPRISANNLLEFETESFVVDGQTEDGEQTQEVECSDDEQPQIAFISVPDFDDGVSEME
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -