Afun004540.1
Basic Information
- Insect
- Anopheles funestus
- Gene Symbol
- -
- Assembly
- None
- Location
- Contig1:3054770-3056637[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 8.9e-08 0.00019 20.8 0.0 2 38 19 55 18 60 0.86 2 2 1.1 2.3e+03 -1.8 0.0 26 32 261 267 259 269 0.82
Sequence Information
- Coding Sequence
- ATGGCCGATAACCACGACAGTATCCGTTGTCGCAAATCATCCAACCCTTATACAAGGCAAGATTTGAGGAATGCAATTAATCTGATAGTTGAACGCGGCACCTCTATTCGCCGGGCGGCTTTCGTTTGCAATGTGCCACGCACGACTTTGTCCACATATTTGAAATCTCTAAAACACGGAAAAATAAGCAAACTGTTACCACAGGAAGAACAAGCCCTGTACCAGTGGATGACAGACTGCTGCAAAAGAGGATTTTCGATCAAAAAGCGTAACGTGGAAACAGCAGCGGAAGCACTTGTCCAGAAGAATATTCCTGCCCGCACACATCCTTTCCAGGATACGGAATTTGGAAGGCGATGCTATCAGAAATTCGTGAAAAGATGGCTTTCCATTGATCGTGTCAAGGATCGCAAACATCTCGGTGCCATAATGGATTGGTATCTACACATTGAAAGCTACCTGAACGAATCGAATTTGTTTGAAATTTTGAACCATCCTACCCGTATCTTTCTATGCGATGAATTACGCTTCCGCGAGCGGGTTGAAATGGATGAAAGAGTGCGGACGTTGCTGAAAAAGATGACAATGCTTTACACTTTCTCTGCGGCGGGGCAGCATCTGTCCCCGTTGCTCGTTTACCCGTATCGACGCGACGTTCCACCACACATAGTGCAGGCAGCTCCGAAAAACTGTGCCATAGTAGCACAAGAGTATGGCCAAGTGACGCCAAAAACGTTCGCCGCTTACCTAGACAAGGTGGTGGACAAGTTCGTAACGACATACGACATTCCCAAACCAGTGATCATGTTTGTGGATGAATCCCACGTAGATCTGACACTACACCTGCACAACACCTGCAAACGGTTGGGCATCATACTGATTGGTTTGTCTGCTGCTCAAGTAGTGAAACCCACTGCGAATGCATTTAACCATATTTGCAACGGATGGGAACAGGAGCTTCCGAAGTGGGAAACTGAAAATGGTCGCGAATTCACGCTGGCTGAATGTGCTGGACTCATGCAGCAAATCAACCAACGGTATATCAACAGTACGGTGCTTGTGAAAGATTTTGCTGATAGCAATTTGTGTCCTTGGAAGCGGCCTATACGCGAGATAGTCGACGATGTCGCGACAGTAACGCATGATGATATGGAAGATGAGGACGACGATGATATTGAAATCGAACATTTCCTAGAAAATGTTGACGGCTGGTCAGATGGAGATGAAGCAGAAGATTTCGATCTTGGAGACGATGAATTCAATGGTATGGATGGCATTGACGAAGCCACCGACGAGCCACCGAAGGATATGATGGTGAAAATAGCTGAAGAACGTAGAGATGTGAACGATAAAAAGACGGAAACGAAGGCTACCACAGCTGAATCTACCGGGACAGAGCTTGGTAATTCGAATCCTGCTTCCGACAAGCCCGAAATTGCCGACGATAATTATTCTAACACCATTGAGAAGACGAATGAGAACGTTACCGTCGATGGAAATGCATGTGTCCAAACACTGCAAACGCCGCAAAACGACTCCAATTCGGAGACGGATGATTACCAGGATGGACCACCGGATGACATCGATATTAGTATTAATTTTATCGACTTCAAACGTGCCATCGGCAGTGAGCTGACGGAAAAGTTTGAACGCAAACTTGAAATTGAAAATCGTCTACCCCTGGGTAACCATGCCGAGAACGTGCTGTTCGACATTTATCGTCAATTTCGATGCGATGTTGTCACTGATAGTGATGACGATTACGATATTGTGGAGGTAGGCGATGAATGA
- Protein Sequence
- MADNHDSIRCRKSSNPYTRQDLRNAINLIVERGTSIRRAAFVCNVPRTTLSTYLKSLKHGKISKLLPQEEQALYQWMTDCCKRGFSIKKRNVETAAEALVQKNIPARTHPFQDTEFGRRCYQKFVKRWLSIDRVKDRKHLGAIMDWYLHIESYLNESNLFEILNHPTRIFLCDELRFRERVEMDERVRTLLKKMTMLYTFSAAGQHLSPLLVYPYRRDVPPHIVQAAPKNCAIVAQEYGQVTPKTFAAYLDKVVDKFVTTYDIPKPVIMFVDESHVDLTLHLHNTCKRLGIILIGLSAAQVVKPTANAFNHICNGWEQELPKWETENGREFTLAECAGLMQQINQRYINSTVLVKDFADSNLCPWKRPIREIVDDVATVTHDDMEDEDDDDIEIEHFLENVDGWSDGDEAEDFDLGDDEFNGMDGIDEATDEPPKDMMVKIAEERRDVNDKKTETKATTAESTGTELGNSNPASDKPEIADDNYSNTIEKTNENVTVDGNACVQTLQTPQNDSNSETDDYQDGPPDDIDISINFIDFKRAIGSELTEKFERKLEIENRLPLGNHAENVLFDIYRQFRCDVVTDSDDDYDIVEVGDE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00105071;
- 90% Identity
- -
- 80% Identity
- -