Afon004092.1
Basic Information
- Insect
- Anopheles fontenillei
- Gene Symbol
- -
- Assembly
- GCA_008817895.1
- Location
- VTWG01026757.1:978-2854[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.23 13 6.2 1.1 5 23 235 253 234 253 0.83 2 11 0.00026 0.015 15.5 0.4 1 23 259 282 259 282 0.98 3 11 0.00037 0.021 15.0 0.4 2 23 289 311 288 311 0.95 4 11 0.0042 0.24 11.7 6.3 1 23 316 338 316 339 0.96 5 11 8 4.5e+02 1.4 0.5 6 23 352 369 350 369 0.76 6 11 0.0004 0.023 14.9 0.1 1 23 375 398 375 398 0.97 7 11 0.0051 0.29 11.4 1.2 2 23 405 427 404 427 0.96 8 11 9.3e-05 0.0053 16.9 3.1 1 23 433 456 433 456 0.96 9 11 6.3e-05 0.0036 17.4 0.2 1 23 462 484 462 484 0.98 10 11 0.00027 0.015 15.4 3.5 1 23 490 512 490 512 0.98 11 11 2.1e-05 0.0012 18.9 0.8 1 23 517 540 517 540 0.96
Sequence Information
- Coding Sequence
- ATGGCGGACAGAATTAGcgaattaaataatatttgccGGCTCTGTTTGTGCGAAGACGATGAGGCGCTCTTTCCCGTGTCCAGCATCATCGATCCCTCGCTAACGGATGTAGATATAGAGCGTTTCACCGGGATACAGGTAAGTTTCCGCTTCTCGTTGANGTTGCAGCTGTTTGGCGAAGAATGTATATCGTACTCGATCTGTGTGGACTGTGGTAATAAGCTGAAAAAGTGCTCTTTATTCCGTGCGGCGTGTTTAAACAATGACACCCTGTTCAAGCAACTGTTTGCGGTGCTGCTCGAAAGCGCCAGGAAGGAAACTTTGAGCGGAGAAAATCGCGATAAAAAGGAGGAAGCGGTGGAACAGCACGAGGAAGAAATCTTGGAAGAGTTCGCGCTGGTCGAGGCAAGCGAACGTTTGGAGCAACTGATCGAGCAAGCGGAAGATGTTGAGATCGAAACGCAAGAGCTTTCcggggaagaagaagaggaaaccGCCAGCAGTGACGAGATGGAAGACGGCTCGCAGGAAAACGCCGAAAGCGGCGACGAGTCTGGGACGAACAATTTGTTGGACGAAAGCACTGACAGTGTAGAAAATAGTCCGCCCGCTCGTACGAGGCGGCTGTCCTCGCGGTCGGCCAGAAGCGCGCAAACGAGCGACGCAACCCGCTCACGGAGGAAGGCAGACCAACACTATCAGCATTGCGATGCGTGCGGGAAGATGGTTTCGGATCTGAAAAGCCACATGCTCAGCCACACGAAGGAGAAACGGTTCTCCTGCCCGTACTGTGCCGTGACGATGACGTTCAAGTCGAATCTAAACATCCATATCAAGACGGTCCATTTGAAGGAGATTTCGAAATCGTGCGAGTTGTGCGGGCAAGGATTCGTCAATTACAATTCCTACAAGAACCATATGGCCTCACAGCACGGAACGGGTGAGTACAGCTGTGAAACGTGTGCGAAAAGGTTTACGCATCTGCGAACGTACAACATGCACGTGCGCCGGCACCATAAAGCCGATGCGACgtacaagaaaaagaagcaacttTGTGGCACGTGCGGCGCCATGGTTACGCACATAGCGACGCACATGCTCACCCATACGCAGGAGAAGCGGTACGCCTGTCCGCACTGTCCAATCGAAATGGTGGACCGGGGGAATCTGATGCGCCATGTCCGGTCGGTCCATCTGCAGAGTGAGGTGAAGTCGTGCGAAACGTGCGGCATTGGCTTCAAGTATCCCAGCTCGCACAGATCTCACATGCTCCGAGTGCACGGCATTGGGAAAACGTTCGACTGCCACATGTGTGCCAAAAAGTTCAACCACAACAGTGGGCTTAAATCGCACATTGCCCGAGTGCACAGCAATGAGCGAAAGTTTGAGTGTGAAACGTGCGGGATGCTGTTTAAAGTGAAAGTCGCCCTTACGAAGCATCAGCTAGTGCACTCGACGGAGCAACCGTACGCGTGCAATCAATGTCCGAAACGGTTCAAAAGCCGCCATGGACGCAATTCACACCAACTGACCCACAGTGGCATAGTGTTTCCGTGTCCGCACTGTGACAAATCGTACCGGTACAAGGATGTGCTTGGTATTCACATCCGGCAGAACCATCCCGAAGCAAAGGAAGAGAAGTCGATAGCGTGTGAATAA
- Protein Sequence
- MADRISELNNICRLCLCEDDEALFPVSSIIDPSLTDVDIERFTGIQVSFRFSLXLQLFGEECISYSICVDCGNKLKKCSLFRAACLNNDTLFKQLFAVLLESARKETLSGENRDKKEEAVEQHEEEILEEFALVEASERLEQLIEQAEDVEIETQELSGEEEEETASSDEMEDGSQENAESGDESGTNNLLDESTDSVENSPPARTRRLSSRSARSAQTSDATRSRRKADQHYQHCDACGKMVSDLKSHMLSHTKEKRFSCPYCAVTMTFKSNLNIHIKTVHLKEISKSCELCGQGFVNYNSYKNHMASQHGTGEYSCETCAKRFTHLRTYNMHVRRHHKADATYKKKKQLCGTCGAMVTHIATHMLTHTQEKRYACPHCPIEMVDRGNLMRHVRSVHLQSEVKSCETCGIGFKYPSSHRSHMLRVHGIGKTFDCHMCAKKFNHNSGLKSHIARVHSNERKFECETCGMLFKVKVALTKHQLVHSTEQPYACNQCPKRFKSRHGRNSHQLTHSGIVFPCPHCDKSYRYKDVLGIHIRQNHPEAKEEKSIACE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00104608;
- 90% Identity
- iTF_00104608;
- 80% Identity
- -