Afon010245.1
Basic Information
- Insect
- Anopheles fontenillei
- Gene Symbol
- -
- Assembly
- GCA_008817895.1
- Location
- VTWG01017091.1:9965-11581[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 0.23 4.2e+02 0.5 0.0 3 14 235 246 234 249 0.88 2 4 1.5e-07 0.00027 20.3 0.2 4 36 300 333 298 336 0.88 3 4 0.00014 0.25 10.8 0.0 21 42 366 387 353 389 0.85 4 4 8.8e-13 1.6e-09 37.0 0.0 4 38 409 443 407 448 0.94
Sequence Information
- Coding Sequence
- ATGGCGAACAGCTCCTGCTTGACGTGGCTCAACTTTCGCGAGCACATGCTAAACACCTTCTGCGGAATCTACCGCACGCAGCAGCACACCGATTGCCGCTTGATCGTACCCGACGGTGAGCTGTACGCGAACCGTCCGATCCTGTGCATGGCATCCAGCTTCCTGGAGACGATTCTGGACGGTCTGCCTACCATCGGTGCGGAAATGGTAACGATTGTAATACCGGACTTGACGCTAGCGACGTTACGCGCCGTCCTGCAGTTCATTTACACCGGGGAAGCAAGCGTACGGTCGGACGAAATGGCATCGTTTGTGGAGGCCTGCAGCTTTCTGCAGCTGCGCGGAGTGCGTTTTATCGCGAATCAGATTGTGGGCATACGATTCGGCAAGACTGTTGGTATGGTTTCGGAGGAGCTTATTCCTGCCAGCGATGGTTTGGAATCGACGGCATGCCCAAGGGAAGAACTGTTCGTTGCGCAAGTGGAGGAACAGGCAGAAGAGgatgaggaagaggaggaacaAACAGAAATGCCTATAACACAATCACTAGTCCAACCTGTTGAATGCTTCATTCCAGAATCGAGCGAATCCGTCCAAGAACACGTTGAAGGTAATGAAATTGTTCAAGTCGTGTTGAATATCCCATCAGATGCGACTCCTGCCTGCGAACGGGAAACCTCTCAATGTGTAGAAATTCCACAGGAACGGTTAACGCAAGCAATTGAAGCAATTATAAAGGACCACGAAAGCTATGAAATCACATCCGTTCCATGTGCAATCGACACCACCGTCCCCACCCCGTCGGAAACAAATACAACGATCCGTCCGCCGTTCGAAGATGAGCTGGAACAAGCAAACCCCGAACCACCACTATCCGACCCTGCCAGTTACGATGCACGTCTTGCGTTAGCGATGGATGCAATCCTTCACCACGGCATTAGCTACCGGATTGCCGCCAGGCAGTACAGCATCGCTAAAACGGTACTGTGGCGCAAGGCGATGAAAATGCCGCGACCGGTTCGGGTCGGCTCCCCGAAGCTGAGCGCTCAACGGCGGGAAGCGATCGATGCACTGAAAACGGGCGAGAAGCTCGCACACGTGAGCCGACGGTTCGAGATTCCGCTGTCGACGCTGCACCGGGAAAAGCAACGGCTGTACAGCAAGGGCGCACTGCCGAGCAATGTGTCGCTGAAGCTGCGCGGTAAGGATGAGTCGGTGCGGAAGCGGTTGCAGGAGGCGGTGGGTGACTGTGTGGCGGGCAGGATGTCACTGTCCGAGGCAGCCCGGACATACGGCCTACCGAAGACGTCCATCTGGCGCAGGGTACGATCGCTACAGACCAGTGGCTGCAGTAGTAGCGGAATGAACGAGGAGAATTCTGCAAGCGACGCAATGGCAGAGCGACCGAATCAATCGGAAGAGGctgaggtggaggaggaggaggaggatgatgatgctaaGCTAACGATGGGCGGCATCCTGTTAAGGGGGAGTGATACGCTTCAGGTTGGGGCAGGATATATGTCCGATGAGAATACTTCGGCGAGCGATTTAGCGCAATTAAGGTATCAGCTGACCTCGAACTATGACGATCACGTATTGAATGATAGTTTATAA
- Protein Sequence
- MANSSCLTWLNFREHMLNTFCGIYRTQQHTDCRLIVPDGELYANRPILCMASSFLETILDGLPTIGAEMVTIVIPDLTLATLRAVLQFIYTGEASVRSDEMASFVEACSFLQLRGVRFIANQIVGIRFGKTVGMVSEELIPASDGLESTACPREELFVAQVEEQAEEDEEEEEQTEMPITQSLVQPVECFIPESSESVQEHVEGNEIVQVVLNIPSDATPACERETSQCVEIPQERLTQAIEAIIKDHESYEITSVPCAIDTTVPTPSETNTTIRPPFEDELEQANPEPPLSDPASYDARLALAMDAILHHGISYRIAARQYSIAKTVLWRKAMKMPRPVRVGSPKLSAQRREAIDALKTGEKLAHVSRRFEIPLSTLHREKQRLYSKGALPSNVSLKLRGKDESVRKRLQEAVGDCVAGRMSLSEAARTYGLPKTSIWRRVRSLQTSGCSSSGMNEENSASDAMAERPNQSEEAEVEEEEEDDDAKLTMGGILLRGSDTLQVGAGYMSDENTSASDLAQLRYQLTSNYDDHVLNDSL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00102480;
- 90% Identity
- iTF_00102480;
- 80% Identity
- iTF_00101077;