Afon000268.1
Basic Information
- Insect
- Anopheles fontenillei
- Gene Symbol
- -
- Assembly
- GCA_008817895.1
- Location
- VTWG01001957.1:49093-52115[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 4e-12 7.3e-09 34.9 0.0 2 39 273 311 272 315 0.90 2 4 1.3e-12 2.4e-09 36.5 0.1 2 39 327 364 326 367 0.94 3 4 1.9e-18 3.6e-15 55.1 0.0 3 45 383 426 381 426 0.97 4 4 1.3e-17 2.4e-14 52.5 0.0 1 43 433 476 433 477 0.96
Sequence Information
- Coding Sequence
- ATGGCCAGCCTAGGGATGGGCGTTGGAATAAATGGTGGTTCCGTTATGGGCGTACCGATGGGATATTTGGACTTTGCACCAGAGCCTCCAGCACCGACGGCGACGCCAGTGACAGAGCATGTGGACATTAATTGTGCGCCTAGCAGCCACGATACACGTGATCTGTCCAATTCTGTGCCAAACGATGGTGACTTACGAGTGAAATTCGAAACGTTACGTTCGCTAGATCCTCCGAATGCGGTGCAACTGGACAATCACACAACACCGCAGCCAGCGGGTgctcaacagcagcagaatgaCCATCAGCGGCACTCGCCGCCgcacatgcagcagcagcaacaaccacagcagcacGTAATGCTGATggatcaacagcagcagcagcaccacccaACCACCCATAGTCCGGCGTCAAGTGTGTCGTCCTCATCGTCCAGCCAGCATCCGGAGAACTTGGTTACTGGCAGCGGTGGTGCTGCCGGCTCGGTGACGCCTGGTCCGCCCACCAACAATAGCAACGGCAACGGAGCGGGCGGCGATGAGTTGAAGCCGAGACTGAACCTGAAGCAGGAAAACATCAGcgatgagcagcagcatcaaacgATGGAGGTCGAGCAAGACCAGTCCTCGATGCACGGCATGGTGGTAACGCCGGAAATTTCGGGCATCATGAACCAGAGCCAAATGAGCGATATGTACCAGTCGGATGCTAGCGAGGACTCGAAGGTGGGAATTCTGGACGGTTCCTCGATGCAGTACACCAATCTGACCAGCCCCAACGAAGCGAAAACGCCTACCGGACCGAAAACATGGACCGCGGAAGATATGGAGTCGGCGCTCGAAGCGCTACGCTCTCACAACATGAGCTTGACTAAGGCCTCTGCTACGTACGGTATTCCATCGACGACACTGTGGCAGCGGGCGCACCGGCTCGGCATCGATACACCGAAAAAGGAGGGTCCGTCCAAGACGTGGAACGAGGACTCGCTCAACAGCGCACTGGAAGCGCTACGGACGGGCACGATCTCCGCCAACAAGGCCTCGAAAGCGTTCGGCATACCGTCGTCGACGCTGTACAAGATTGCGCGCCGCGAAGGCATCCGCCTGGCGGCGCCGTTCAATGCCGCACCCACCACCTGGTCCGCGGAAGATTTGGACCGTGCCTTGGAAGCGATCCGTGCCGGGCAGACCTCCGTACAGAAGGCCAGCACCGAGTTCGGCATTCCCACTGGCACACTGTACGGGCGCTGCAAGCGCGAGGGCATCGAGCTGTCCCGATCGAATCCCACGCCCTGGTCCGAAGACGCGATGATGGAGGCGTTGGAATCTGTCAAGCAAGGACACATGTCCATCAATCAAGCCGCCATCCACTATAACCTACCGTACAGCTCACTGTACGGTCGGTTCAAGCGCGGCAAGTACGATACGCCCAGCTCgggaggcggcggcggtggcagttcgtccaatgctgctgctgctgctgctaccggtgGAGGCGGCGCGGGCAGCGGTGGCGGTAGTGGCGCCGGCAGCGCCGCTAGTGCCGGAACAGGTGGCAATAATGTTGGCAGTAGTCCCCAGATGGAGTTTAAAATAGAACCACAGCATAACGATCATAGTCCAGAGAACACGGTAAATTACagttattattaa
- Protein Sequence
- MASLGMGVGINGGSVMGVPMGYLDFAPEPPAPTATPVTEHVDINCAPSSHDTRDLSNSVPNDGDLRVKFETLRSLDPPNAVQLDNHTTPQPAGAQQQQNDHQRHSPPHMQQQQQPQQHVMLMDQQQQQHHPTTHSPASSVSSSSSSQHPENLVTGSGGAAGSVTPGPPTNNSNGNGAGGDELKPRLNLKQENISDEQQHQTMEVEQDQSSMHGMVVTPEISGIMNQSQMSDMYQSDASEDSKVGILDGSSMQYTNLTSPNEAKTPTGPKTWTAEDMESALEALRSHNMSLTKASATYGIPSTTLWQRAHRLGIDTPKKEGPSKTWNEDSLNSALEALRTGTISANKASKAFGIPSSTLYKIARREGIRLAAPFNAAPTTWSAEDLDRALEAIRAGQTSVQKASTEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMMEALESVKQGHMSINQAAIHYNLPYSSLYGRFKRGKYDTPSSGGGGGGSSSNAAAAAATGGGGAGSGGGSGAGSAASAGTGGNNVGSSPQMEFKIEPQHNDHSPENTVNYSYY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -