Basic Information

Gene Symbol
nfxl1
Assembly
GCA_000473445.2
Location
KI915041.1:21622209-21625580[+]

Transcription Factor Domain

TF Family
zf-NF-X1
Domain
zf-NF-X1 domain
PFAM
PF01422
TF Group
Zinc-Coordinating Group
Description
This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 17 0.88 5.7e+03 -3.0 1.4 14 19 217 222 217 222 0.86
2 17 0.071 4.6e+02 0.5 0.3 4 10 253 259 252 261 0.94
3 17 2.6e-08 0.00017 21.1 17.9 1 19 267 284 267 284 0.99
4 17 0.00096 6.2 6.5 15.9 1 19 320 339 320 339 0.96
5 17 0.73 4.7e+03 -2.7 1.9 6 10 364 368 363 368 0.90
6 17 1.6e-07 0.001 18.6 11.4 1 19 374 392 374 392 0.93
7 17 1.8 1.2e+04 -4.0 0.7 6 10 419 423 418 425 0.58
8 17 3.6e-08 0.00023 20.6 14.5 1 18 429 446 429 447 0.97
9 17 1.9 1.2e+04 -4.0 0.3 9 11 464 466 464 467 0.78
10 17 3.5e-06 0.023 14.3 15.2 1 18 481 498 481 499 0.97
11 17 2 1.3e+04 -4.4 1.1 5 10 513 518 513 518 0.78
12 17 0.00021 1.4 8.6 9.8 9 18 531 540 530 541 0.93
13 17 0.13 8.1e+02 -0.3 5.7 3 12 554 563 544 563 0.85
14 17 1.3e-05 0.081 12.5 3.9 1 12 634 645 634 645 0.97
15 17 0.99 6.4e+03 -3.1 1.1 15 18 658 661 657 662 0.85
16 17 0.00012 0.77 9.4 12.3 1 18 673 689 673 690 0.97
17 17 1.5e-06 0.0097 15.5 11.9 1 16 747 761 747 766 0.94

Sequence Information

Coding Sequence
ATGGCTAGTCGTAATCGTGGCGGAAAAGTAGCTTCCAAAGAGCAAAACGCTTGGAAGTTGCCTGTACAACCGAAACCCGAAACGTTCGTTGGAAAACCACGGAAAGCATCCAACAAACCCACTGCCGGCGATTTACCAACGGCGGAACAGAGTTTGGGCGGTTCGAAAATCCCTCTGCCTACCGTATCATCTAGTATGCTGAAAAAATCACAGGCAAAGTTCGATCAAGTCCAGCGGCAGCATGTCGAAAAGGCACGCAAATATGCCACCGAGTACGTCTCTAGCGAAGATGATGAACAGGACGGTGAGGCGAACGGAGAGGAAGCGAGCGACGAAACTAATCGCACAATCCTAGGGGACGTATTGAAAAACTACAACGGCATCGATGCGGACGTGGGCAAAACGCAGGAATACCTGCAGCACCTTCTCGAATCACGCAACGCCGTCTGCCTGATCTGCATCGAGACGGTTAAGCGTGCGGATAGGATCTGGTCCTGCGGCTCGTGCTTCACTTTCTTCCATCTGATGTGCATCCAACGCTGGGCTAATGATAGCATGTCCATGAAGCGTATGCATCACGAGCAGCAGGAAGGCTACTACAACAATCGGGGAGAGTACATCCCGAAGCCGGCGCTGAACGTGCACTGGGACTGTCCGAAGTGTCGGCGAGAGTACGAACCGGCGGAGGTACCGCGTCACTACGAGTGTTTCTGCGGCAAAGAGCGTGAACCAAACGCCCACCCGTGGCTGATTCCACATTCGTGTGGTGAACCGTGCGGAAAGCAGCTTAAACCGACATGTGGACACACGTGCCGGTTGCTCTGCCATCCAGGGCCGTGTCCACCGTGCCCGCAGACCATTAACGTGTCGTGTCGGTGCGGCAGCTCGCCTGTGAAAACGATTCGATGCGCGCAGCAAGCGTGGAGCTGTGTAAAGAAGTGCAAACGTAAGCTGGCGTGTGGTATACACGAGTGTGGAGCCCAGTGCCACGAGCCGAACCAGTGTCCACCATGTCAGAACCGCAGCAAACAACCGTGTCTCTGCGGGACGAAGACCAAAGAAGTAAACTGTCACGAGGCGCGCTGGCAATGCGAGAAAGTGTGCAACAAACCGTTCGCCTGTAACGTGCATCGTTGCCAGCGGATCTGCCACGAGGGAGCTTGTGGTGACTGCCCGCTCGGATTGCCCCGATCGTGTCCGTGCGGTAAGTCGGAAACGCGTACCGCCGTCTCCTGCGCGGAACAGATCGGCACGTGTGGCGATACGTGCGAGAAGCTGCTGGCATGCGGTGAACATACGTGCGCGGAACGATGCCATCAGGGACCATGCGGCAACTGTTTGGAGCTGGTGCCGAAGGTGTGTCGCTGTGGTTCAACCAAGAAACCGATCGTTTGCCATCGGGAGGCACTATGCGAGGGAAAGTGCAAGCGGATGCGTACCTGCGGCAAGCATCAGTGCAACCGGAAGTGCTGCGATGGCCAGTGTCAGCTGTGTGATCGTGTGGCTTGTGGCCGCGAGCGTAAAGCGAATGCACCAAAGTGTAAGTTGCCGTGCCGGACGGCGTCGAAATGCCATCATCCGAATGTGCACACCTGTCACCCTGGCGAATGTCCACCGTGTGTTCAACCGTGCGGTGAGCGAAACGATACGACCAACTGCGAGCATCCGTGTAGGGCCAAGTGCCACGATGCGGTTCGGGTGGTGACCCGTGACAAAAACTTTAAACCAGTCGGCCCATGGGATGTACCTCAGGAGATCGTTGAGGTGAAGAAGCTGCCCCACCCAGCCTGTGCCGAGAAGGTTCCGGTTATGTGTCTCGGTGGACACGAAACTTCCGATTGGCCGTGTGCGAACTCGAAACCCTCGTCGTGTGGCCAAACGTGCGGACGATCGCTCAAGTGCGGTATGCATCGGTGTGCGCTGATCTGTCATAAAGTGACGCACAGGGCCAGCACAACGCAAGATTCGCGCTGCGAACCGTGTGCGTCCGGGTGTACGCTTGCACGTCCCGAAGGTTGTGGGCATGCTTGTGTACGGGCCTGCCACACACCACCGTGCGATCCGTGTCTGGTGTCGATAAAGGCAAACTGCTACTGTGGTCTGACGCAGGTGTACTACAAATGCCACGAGTTTTATCCGTTCGGAATGGATACGATGAGCGCGGAGGAAAAGGAAGCGCTGAAACGCCGACGAGAGTCCTTTCTCAGCTGCGGACAGAAGTGCATCAGAAACCTCCCGTGCGGTCATCGATGCACAGCGATCTGTCATCCGGGCCGCTGCCCGAATCCGGAACTGTGCGTAAAGAAGGTTAAAATAAGTTGCCAGTGTGCGCAGCGCAAGATGGAGGTTAGCTGCAAGGTGGCCCGCGCCAGTTCCACACTCGACTGTGACGAGCAGTGCGCGGCCATTAAGGCCCAGAAACAGGAGGAGCTGGATCGTAAGGAGCGAGAGGTACGCGCCCAGGAGGAGCTCGAACAACAGCGAGAGCTGGAAGAGTACGAGCGCAAGTTTGGTCGGCGTAAGCATCGCGAACGGAAACGCCACCAGGTGCAGCAGGAGGAACCGGGCAGACATTGGGCCGTGTACGCTGTGCCCATTGTGGCTGTTGTAGTTGCAGTTCTGGTGTATTTCTTGTTCCTGCAATGA
Protein Sequence
MASRNRGGKVASKEQNAWKLPVQPKPETFVGKPRKASNKPTAGDLPTAEQSLGGSKIPLPTVSSSMLKKSQAKFDQVQRQHVEKARKYATEYVSSEDDEQDGEANGEEASDETNRTILGDVLKNYNGIDADVGKTQEYLQHLLESRNAVCLICIETVKRADRIWSCGSCFTFFHLMCIQRWANDSMSMKRMHHEQQEGYYNNRGEYIPKPALNVHWDCPKCRREYEPAEVPRHYECFCGKEREPNAHPWLIPHSCGEPCGKQLKPTCGHTCRLLCHPGPCPPCPQTINVSCRCGSSPVKTIRCAQQAWSCVKKCKRKLACGIHECGAQCHEPNQCPPCQNRSKQPCLCGTKTKEVNCHEARWQCEKVCNKPFACNVHRCQRICHEGACGDCPLGLPRSCPCGKSETRTAVSCAEQIGTCGDTCEKLLACGEHTCAERCHQGPCGNCLELVPKVCRCGSTKKPIVCHREALCEGKCKRMRTCGKHQCNRKCCDGQCQLCDRVACGRERKANAPKCKLPCRTASKCHHPNVHTCHPGECPPCVQPCGERNDTTNCEHPCRAKCHDAVRVVTRDKNFKPVGPWDVPQEIVEVKKLPHPACAEKVPVMCLGGHETSDWPCANSKPSSCGQTCGRSLKCGMHRCALICHKVTHRASTTQDSRCEPCASGCTLARPEGCGHACVRACHTPPCDPCLVSIKANCYCGLTQVYYKCHEFYPFGMDTMSAEEKEALKRRRESFLSCGQKCIRNLPCGHRCTAICHPGRCPNPELCVKKVKISCQCAQRKMEVSCKVARASSTLDCDEQCAAIKAQKQEELDRKEREVRAQEELEQQRELEEYERKFGRRKHRERKRHQVQQEEPGRHWAVYAVPIVAVVVAVLVYFLFLQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00106712; iTF_00099379;
90% Identity
iTF_00106712;
80% Identity
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