Afar000996.1
Basic Information
- Insect
- Anopheles farauti
- Gene Symbol
- Zfy2
- Assembly
- GCA_000473445.2
- Location
- KI915044.1:5581223-5582683[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.25 15 5.8 0.6 2 23 170 192 169 192 0.92 2 10 0.029 1.7 8.8 1.3 6 23 201 218 201 218 0.98 3 10 2.3e-05 0.0014 18.5 1.0 2 23 223 245 222 245 0.96 4 10 3e-05 0.0018 18.2 0.4 1 23 253 275 253 275 0.98 5 10 0.00012 0.0071 16.3 0.2 2 23 279 301 279 301 0.92 6 10 1.6e-05 0.00093 19.1 0.2 3 23 309 329 307 329 0.96 7 10 0.00053 0.031 14.3 1.4 2 23 339 361 339 361 0.95 8 10 0.042 2.5 8.3 0.9 1 23 368 391 368 391 0.97 9 10 5e-06 0.00029 20.6 4.1 1 23 396 418 396 418 0.97 10 10 0.052 3.1 8.0 6.6 1 23 424 447 424 447 0.95
Sequence Information
- Coding Sequence
- ATGGATGAAAAATTTCGATTAAAACTCGATAAAGTGTTTTTGTTTGAGATTACTGCTGCAGAGACACTTCCGGTTCGGGTATGTGCACGGTGCCAGCAGACAGTATCCGATTTTCACGCTTACAGTCAGCAGGTGCAAGCGAACCAGGAACAGTTGCTGCAGACAACAACTAAAGACGATGCACCCCAGCCCGTCGAAACGATCAAAGTAGAACCATTATATTCGATAGATTTTCTCGACACGGAAACATTAGAAGAACCACCGAGAAGTATAGAATGTGTTGATGTGAAGAACGAATCGCTTGAAAGTGATGATTTGTCGGCATCGGAACAGGATTTCGATGAATCATCTGACGGGGAAGCCATAACGACCACTAGAAAGTGTCGCTTCAAGGCAAAAGTAAGACCCAGGGGAAGACCAGCGAAACTTAAAACCAAAGACAAATCCGAGTCCAGTCTCGCTCTGCAGCAGGAAAAGGACGAGACGATAAAAAATTTCTTCACACTAGAGTGTGAGATATGTTCCTCGCCGTTGGAAGACTTTAGTCAGCTACAGGATCACTACCACCAGAAACACGACACGCGGGGCTACATACGTTGCTGTAATAAGCAGTTTTTTCATCGATACACCCTGCTCAATCACATTGCCGTGCATAGGGGCACGATACGGTGTGAGATATGTAAACGGACGTACAAAACGAAGCGCTACCTAGCGTTGCATATGGCAAAAAGTCACGGCACCGAGGAGGAGCGTCCGTTCAAGTGTGACAAATGTGGATTGGCGTATCCCAAAGAGTATCTACTCCGATCGCACCAGCTTATGCACGTGCAGGCCGAATGTCCTATCTGTAAGAAGACTTTATCTAGCAACTACGCTCTGAAGGTTCACGTCACACAGATGCACAGCGACGACAGCAATCAGATCTGTGCGACGTGCGGGAAAATGTTTCGCACGAAGCCCGCCATGGAGCGACACATCAAGGAACATTTGGGCCTAGACCCAGTCGAGCGGGAACAGTGTATGTACTGCCAGAAATGGTTTAATGGAAAGTATAATCTGAACAAACACATTCGATTCCTGCACAACGAGAAGGGTCAGGTGTTTCGGTGCGACGTGTGTTCACACGAGAGCCCCAATAGTCGAGCTCTGGCGTACCACAAGCAGCGTGTGCATGTGCAGGAGAAGCATGAGTGTGAACACTGCGGGAAGCGCTTCAAGCGGAAGCTCTATCTGCGCGAACACATCGCTTCTCACACGAACAACCCCCTGTACACGTGCGAGTACTGCGGGATGAAGTTTAATTCACATGCGAATCATTTTACGCACCGGAAGAACAAGCATCCGCAAGAGTGGGAAGAACACAAGAGCCAGAGACTGATGAAGAAGATGAGTAAAAATTAA
- Protein Sequence
- MDEKFRLKLDKVFLFEITAAETLPVRVCARCQQTVSDFHAYSQQVQANQEQLLQTTTKDDAPQPVETIKVEPLYSIDFLDTETLEEPPRSIECVDVKNESLESDDLSASEQDFDESSDGEAITTTRKCRFKAKVRPRGRPAKLKTKDKSESSLALQQEKDETIKNFFTLECEICSSPLEDFSQLQDHYHQKHDTRGYIRCCNKQFFHRYTLLNHIAVHRGTIRCEICKRTYKTKRYLALHMAKSHGTEEERPFKCDKCGLAYPKEYLLRSHQLMHVQAECPICKKTLSSNYALKVHVTQMHSDDSNQICATCGKMFRTKPAMERHIKEHLGLDPVEREQCMYCQKWFNGKYNLNKHIRFLHNEKGQVFRCDVCSHESPNSRALAYHKQRVHVQEKHECEHCGKRFKRKLYLREHIASHTNNPLYTCEYCGMKFNSHANHFTHRKNKHPQEWEEHKSQRLMKKMSKN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00103175; iTF_00106547; iTF_00099193;
- 90% Identity
- iTF_00103175;
- 80% Identity
- -