Afar000412.1
Basic Information
- Insect
- Anopheles farauti
- Gene Symbol
- -
- Assembly
- GCA_000473445.2
- Location
- KI915044.1:2932976-2940920[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.0057 0.33 11.0 3.7 1 23 366 388 366 388 0.95 2 15 6.3 3.7e+02 1.5 0.1 3 8 392 397 391 414 0.87 3 15 6.9e-05 0.0041 17.1 2.4 1 23 419 441 419 441 0.95 4 15 9.3e-06 0.00055 19.8 1.3 1 23 459 483 459 483 0.92 5 15 0.0095 0.56 10.3 1.4 2 23 489 511 488 512 0.94 6 15 0.0013 0.077 13.0 0.2 1 23 538 561 538 561 0.97 7 15 0.065 3.8 7.7 3.5 1 20 568 587 568 590 0.94 8 15 5.6e-05 0.0033 17.3 3.4 3 23 598 621 596 622 0.92 9 15 0.2 12 6.2 1.0 1 23 835 858 835 858 0.94 10 15 0.0081 0.48 10.5 0.3 2 23 876 899 875 899 0.90 11 15 0.34 20 5.4 0.6 3 23 906 927 904 927 0.95 12 15 0.0026 0.16 12.1 0.4 1 23 933 955 933 955 0.97 13 15 0.088 5.2 7.3 0.2 3 23 965 986 963 986 0.95 14 15 0.0084 0.5 10.5 3.7 1 20 992 1011 992 1014 0.95 15 15 3.4e-05 0.002 18.0 0.1 1 23 1020 1045 1020 1045 0.97
Sequence Information
- Coding Sequence
- ATGGAAGTGAAAATGCAGCACCGGACCCGGGCGCACATGTTCCAGATACAGGTCAAAGCGTTGATCAAAACGCTAAAATGTCTACAGTCGGACGATAAATACCAGGCACTGTTGTTTCTTATCTCGGCCATCAAGTTGTACGTCAAGTTCCTGTACAACGATTGCCAGGAGCGTCTCTACAAACCAGCAATACTCAAAGAGTTGAACAAAATCGAAAATGTGATTGTGTTGAACCTGCTTAAATCGCGCGGGGCGGGTACGTCCGGTTCGTCTTCGTCGGTTGCCACTGGCCGCACGACCGTATCATCCGTGTTCGGTGGCGACATTGCGGGCAAAGCCTGCCTCGACCTCGATACAACAACCACGAGCGTCCGCTGCACGGATTTGTCACTCGGTGGCGACGGTCTGCTGCTGATGCACCCGCACCGCAACCACGAACCTCCGCTCGCACCGTGGGACCTCCGAGGGAAGCTTCTGCGGGGTAACCTTTTCGTCGGGCTACCGGCCTCTGATAGCGTGGGGTTTGGGTTGGTACGGTGCAATAGTGGCAGTGGAAGCAGTGGTTCATCGTTATTGCGAACAGGTCAGCGCGTAGCCAGTGCGAACCGGTGGTTGGGCAATGTGCGAATGAACCGTGCGCTGGTTCGTACGATCGCAAATCACGATTTTAAGCTACTGTTCAACATGTTCGAGCAAAACATCTTTCCGACGTGGAAAATCTACAAAAATGAGCGAATATTTGTGCGGAAACGGCCCGCGCTCACGACGGTCACAGTGCGCACTTCCCTGCCCGCCATCTGCTATGGAAGCGGATCGTCCCACTCACCGCCAGCAACGTACATTAAGAAAGAAGAGTTCGATTTCGATCCGCCGTTCTCGATCGCCGACGATTGCTTCGAGGAGATCAAGGACGAGGATGACGAAGACGATCTGATGCTAATGAAGGAGGAGGATTCGATCGACAATTCGAACGAAATCTTCTCGGAGGAGGAATCGTCGACGAACAACACGTCGCTGATGTTGTCGTCCGACACGAACACGCTTGATACGAACGATTCAAGTATGGTTTCGCACGAACGCAACAAAGAACAGGTGTACCAGTGCTTACTATGTGATAAAAGCTATAGAAAACGCAAATCTCTTGTCATCCACTTCAGTCACCATCCGGGTTTTTGTCCCGACTGTGGTAAACAGCGAGGCGTCACCTCTGAGGAAATCGTCGAACACAATCGAATCTACCACAAAAACCGGCCTCACATATGCGAACACTGCGGGGAAACGTTCACACGGAATCAACAGTATCAGATACACGTCCAGGGACATTTCATTAGTCGTGACCGGGTAGCGGAGCAAAATTGTAAAAAAACTCACAAGTACAGCTGTAAAACATGCGGTATAGTTTTCAACAATCAGAAATATCTCGAAAAGCACATCCAGAAAACCAACCACCAGGCGGAGGGTTTGGTGTGCGACGTATGTGGTGCAATATTTTGTAACAGTATCAAACTCAGCCAGCACGTCAGCCGCACACATCACAACGTTTTTGCTCAGAAAGCTACCTTAGAGCGGAGTATGCTCCTGCAGGGAACAAGCGTCGCGGACACGGCGTCTTACACCTGTGACCAGTGTGGTGCCTCCTTTCTCTCTCAACCCTCACTGCGCGAGCACATCAAACTCTCACATTCCGTTCCGGAAAATAAATTCGAGTGCAATATTTGTTACAAACTGTTCGCCGCCAAACGGTCCCTCAAACGCCATAAACTTTGCCATTCGGACGAGCGCGCCTTCCTCTGCACAGTGGAGAACTGCAAAGAGTCGTACAAAAATCAGTCTCATCTTGCCCGCCACATGAAGACCGCCCATCACATCGAACCACCCTCGAAACGGCTGCAAAAAGCGAAGGCGGCAGCGGCAGCAGCAGCTGCAGTATCGTCTACCGCATCAGCTACGGTCACACCTACCCCCACCACTTCTCTGTCGGCAGATCCAAGCTCCGCGAGTACGGACTTTATCGCGCACGGAGACGCCGACTCGCTCAAGGGCATCGGCGGTACGCTAAAGAAATCACTTGGTAGCAGTGAAAAGTCCCTCGGTGACAACAGTAGCGCCACCAACTTCAGCGACAACCTATCGTCGTTTAATTACGAGTTTTCCGACACGACGGCTAGCACGTCGACGCCGGCGTCGACACTAGCTGCTGGCGGTATAGGTGATGGTGGTGGTGGTCTGCTATCAAGCACCGGTTCACTCACGAGCAATCGAACGTCAGCTTTAACCTGTGCGGACCCCCTGGCAACGACACCGGGCACCAGCTTTATGGACGGTGGTATGCCCCATCAAATGCCGAACCATCACCACACCCTGCAGCGTCACCAACTGCAGGTGCAGCCCCATCCTAGTGCGGCGATAGGCAATGCAGTCGGGAGCAACTTCATGGCTAGCACGGTTGGCAGCATACCGGGTAGCAATGTCGGTAGGAGATTTCCTCTACCGGAGAGCAACTTCATGTGCGAACACTGCGATGAAACCAACTTCATTAACGCGCAGCAGTTCCAGCTACACGTGCAGGACCATTTTGCCGCCAAGGAGGGCAGAGATCATCCCGGAAAAAAACTTCTACGGTTAAACTGCAAAACGTGCAACCTGGTGTTTGCCACCGGCGCCCAGCTCGATCGTCACATCCAGAAAACGAACCATCACACCGAGAGTATAGCGTGTGAAATATGTAGTGCAATATTCAACTCCAACCTTAAGGTTTACCAGCACATGTTGAAATGTCATAAGAATGACATTTGGTTTGCTTGTGAACAGTGCTCGAAGGTTTTCATATTGAAACAGGACTATGACAAGCATCAGCTGGTGCACCAAACGGTAACGGATCGTTCAATCATCTGCGAGCACTGCGCATCGTCCTTCCTCACGCAGGAAGCACTGAAAGAACATATCAAAATAGCACATTCGATGGAAAAGAAATACAAATGTAACATTTGCAACAAACTGTTCGCCGCCCGTCGATCGCTGAAACGCCATAAACTGTGCCACGAAGAGGAGGCCGCCTTCCGCTGTCCGATCGATGGCTGCAAGGAAGCGTTCCGGACGGCGGCAAACTTGGCGAAGCACAAAAAGATGGCTCACCCGGCTGGACTGGGCGTTTCACCCTCACCGGGTATTGCACGATCCCATGAACCATCGGTTCCTGAGAAGGTCCCGGCAGGTGCGGGCATGGCAGCCGGTGTAAAATTGTTGCCCGGTGCTGCAGGAATGGCGGCGGGACCATCTACTATAACTCCGGGTGGCAGTGGTCCGGGTGGTGTAACGATGAAGGGAATGGAGAAAGTCATGCATCAGGAGCCGGCGGGACACATGGCGATGTCCCCGGTAGGGGCGCAACCGAACGTTATGGGTCAGCTGGGATCGAATCCGATGATGGCAATGAGTCCTGCGGTCGGATTGAAAGCGGATGGACGAACATCGGCCGGTGGTATGATGGTGGTTCCTCCGTCCAGGACGAGTAGTGCCGGTAGCAGTGTGGGAATAGGAGGAGTTAACAATGGAAGTGGTGGTGCTAATATACCCTACAACCCGTACGATGCTGGCGGAATGAACTACAACAGTAACTTCATTGGAATGAGTAATCCCGGTAATTCCACCGGTCTCCAATACTCCCCTCGAATTGGCGGAGGAGCGACAGGAGCCTCGAATCCGGACCAGCAAACCATCTCGATGGCCCACTACCGAATGGGTGAAGCCGCTGGCCAAGGGGTGCAAGCGGCCGCTTCGAATGCCACCAACATTCCTTACGGTTACGGTCAGATGAATAATGCCTTCGATTGGCAAGCCATGGAGATGGGAAATGCGGCGAACGCTGATCAGCAACAACAGCAGAGCCTAGTAGGTGGGCCGACAGGTCAAACGCAAGGGCCAGCAAAAAGTGCCGCGAATAGTAACAAATACTACAACGCAATGCACGAAACGGCTGCGTCCGGCGTTGGAACCGCATCGACGGATATGATGGGATATCAGGATATGTGGAATGCAAACATGATGAAGATGGAATTTCAAGAGGAAGGTAATAGTGCTACCTCGGGCAACACTGGACCCGCCGGTAACAGTGGCACTCCAACACACCTACCACATCACAACCCTGGGGGACCGCAGCAGCAACAGCAGCAGCAGCAACCCGGTATGAATTTCAATCCCTCCCAGACGCAAGGCGATCAGCAAGTCACCAATGCCAGTGCGAATCCGACGGTCAACATCACGACGGATGTTTCTAAAACACCGAACAATCTTCCCTTCGTCGACAGCTTCACCGAGTCGATCGACTATCTGCAGCAGTCCTTTCAATACGTGTAA
- Protein Sequence
- MEVKMQHRTRAHMFQIQVKALIKTLKCLQSDDKYQALLFLISAIKLYVKFLYNDCQERLYKPAILKELNKIENVIVLNLLKSRGAGTSGSSSSVATGRTTVSSVFGGDIAGKACLDLDTTTTSVRCTDLSLGGDGLLLMHPHRNHEPPLAPWDLRGKLLRGNLFVGLPASDSVGFGLVRCNSGSGSSGSSLLRTGQRVASANRWLGNVRMNRALVRTIANHDFKLLFNMFEQNIFPTWKIYKNERIFVRKRPALTTVTVRTSLPAICYGSGSSHSPPATYIKKEEFDFDPPFSIADDCFEEIKDEDDEDDLMLMKEEDSIDNSNEIFSEEESSTNNTSLMLSSDTNTLDTNDSSMVSHERNKEQVYQCLLCDKSYRKRKSLVIHFSHHPGFCPDCGKQRGVTSEEIVEHNRIYHKNRPHICEHCGETFTRNQQYQIHVQGHFISRDRVAEQNCKKTHKYSCKTCGIVFNNQKYLEKHIQKTNHQAEGLVCDVCGAIFCNSIKLSQHVSRTHHNVFAQKATLERSMLLQGTSVADTASYTCDQCGASFLSQPSLREHIKLSHSVPENKFECNICYKLFAAKRSLKRHKLCHSDERAFLCTVENCKESYKNQSHLARHMKTAHHIEPPSKRLQKAKAAAAAAAAVSSTASATVTPTPTTSLSADPSSASTDFIAHGDADSLKGIGGTLKKSLGSSEKSLGDNSSATNFSDNLSSFNYEFSDTTASTSTPASTLAAGGIGDGGGGLLSSTGSLTSNRTSALTCADPLATTPGTSFMDGGMPHQMPNHHHTLQRHQLQVQPHPSAAIGNAVGSNFMASTVGSIPGSNVGRRFPLPESNFMCEHCDETNFINAQQFQLHVQDHFAAKEGRDHPGKKLLRLNCKTCNLVFATGAQLDRHIQKTNHHTESIACEICSAIFNSNLKVYQHMLKCHKNDIWFACEQCSKVFILKQDYDKHQLVHQTVTDRSIICEHCASSFLTQEALKEHIKIAHSMEKKYKCNICNKLFAARRSLKRHKLCHEEEAAFRCPIDGCKEAFRTAANLAKHKKMAHPAGLGVSPSPGIARSHEPSVPEKVPAGAGMAAGVKLLPGAAGMAAGPSTITPGGSGPGGVTMKGMEKVMHQEPAGHMAMSPVGAQPNVMGQLGSNPMMAMSPAVGLKADGRTSAGGMMVVPPSRTSSAGSSVGIGGVNNGSGGANIPYNPYDAGGMNYNSNFIGMSNPGNSTGLQYSPRIGGGATGASNPDQQTISMAHYRMGEAAGQGVQAAASNATNIPYGYGQMNNAFDWQAMEMGNAANADQQQQQSLVGGPTGQTQGPAKSAANSNKYYNAMHETAASGVGTASTDMMGYQDMWNANMMKMEFQEEGNSATSGNTGPAGNSGTPTHLPHHNPGGPQQQQQQQQPGMNFNPSQTQGDQQVTNASANPTVNITTDVSKTPNNLPFVDSFTESIDYLQQSFQYV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00104572;
- 90% Identity
- -
- 80% Identity
- -