Afar008848.1
Basic Information
- Insect
- Anopheles farauti
- Gene Symbol
- -
- Assembly
- GCA_000473445.2
- Location
- KI915042.1:8043044-8047797[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 7.5e-05 0.0044 16.9 1.1 1 23 254 276 254 276 0.97 2 15 0.035 2.1 8.5 3.2 1 23 282 304 282 304 0.97 3 15 0.00076 0.045 13.8 0.5 3 23 465 485 464 486 0.96 4 15 0.0078 0.46 10.6 0.5 1 23 491 514 491 514 0.95 5 15 0.00042 0.025 14.6 1.2 1 23 544 567 544 567 0.95 6 15 0.23 14 6.0 0.0 2 23 652 673 651 673 0.95 7 15 0.0045 0.27 11.4 2.2 1 23 683 706 683 706 0.94 8 15 0.0024 0.14 12.2 0.8 2 19 714 731 713 732 0.95 9 15 0.00035 0.021 14.8 8.0 1 23 741 763 741 763 0.97 10 15 0.022 1.3 9.2 0.8 2 23 769 790 768 790 0.97 11 15 1.1e-06 6.5e-05 22.7 0.4 1 23 796 818 796 818 0.98 12 15 0.0008 0.047 13.7 0.2 1 23 824 846 824 846 0.97 13 15 2.1e-05 0.0013 18.7 0.1 1 23 852 874 852 875 0.95 14 15 5.1 3e+02 1.7 0.1 3 23 892 916 890 916 0.75 15 15 0.019 1.1 9.4 0.3 1 20 1373 1392 1373 1395 0.93
Sequence Information
- Coding Sequence
- ATGGATCAAAATACGTTTCCCCTTTGGCAAGTGTCGGCTACCGATACGGCAGTGCGAGATAGCGGCACCAGCTCGGTCAACAACGCTGCAAGCATTTCTGCACTGCACTACGTTCCTAGCGTGCGAGAGAAGATGAAGTTCATCAACATAAGTAGCCAAATGCCGCGCACAAACGATTCCGGCAGTTTATACGGTACAACTACCACCACATATTTGCCGGTGGTGAACGAGCGGCGACAGCAGCCGCTTATCCAGCAGCAGCCTCGTCGCGTGACAGCACTCCCGCCGAATGCGACCACTACCTCCATGCTGAATGAATCCATTCTGCTCCAAACGCACGACGGTCGAGAGTATCTCGTGGACGAGAGTTCGATTCAAAACATCGACCAGACACCGCCGGAAAATCTGATCTACATGACCACCACCAGTACCTCCACCACACCTGCCGTAGACGAAGGAGTTCTATCGAATCATCTCGCAATGGATGGCGATGGCGGTAATTACTTGATGCAAAATGGTGGTCAAACGATGGACCACCAGCGGGAGGAGGAAGAGCCCGAACCGGACCTGCAACCCGCCGCAACAACGTACGCGGAAGAGTGCGAAGTGACGGAGGAGATCATCACGGACGATTGGGTGCAGTCGCAGGACGAAGAGTGCGTGCAGGTGACGGTTGATCAACTCGGTGCGAGTGCGATTGTGGTGGAGGACGATATTGCGGTGCCGCTTGATCAGGATCAGTATACGCTTTCGCGCCCGTACCCGTGTGACTTCTGCAGCCGACGCTTTCGGAAGAAGGCTACCCTGCAGAATCACCTGATGGCACACTCGAACGATCGGCCGCATGTGTGCAAATTGTGCGGTGCACAGTACGGTCGGCGTTGCGATCTTATCAACCACTTTAGGCAGCACGCGTATGCTGTTGCCGAACAGGACGAGCTAGCCCTGAGAGGTGGCGGTGGCGAACAGGATGTGGACTATGATTTATCCGAGCTTATGCCACGGCCAGATCTCCCCCAACAACCCAAGAACCGTGCAACGCGACATTCGAGCGACGATGAAGACATGTACGTGCAAAACGCGATGGTGGACTACAACTCCCAGCCACCAATGCAGCTCATCTCCACGACAAGCTACGGTGGCTCAATATCGTCTTCCTTCGCGAATGAGTATCCCTTCCTGCAGCAAACCGACAGTGCTGGAGATATGCTGATACAACAACCGCTACCACCACCATCAGCACCACCACCAACACTACCTTTGCTCGGCCGCAAAAAAGCTGCGAGAAGAGCGACTGCTTACATAAAGAATGAACCTCTCGATACGGCGGAACCGATGGTGTCGGAAATTCGCCCGCTCCTTGGAAGGAGAAAAGGTCGGATATCTTGGCTGTGCCAGGAATGTGGTGTTTCGTTCGCACAGTTAGAAGCACTCGTGAGCCATAAGCGGAATCATCACCACCACAAGGAATACGTGTGCAAGTTTTGCGGTGCCCAGTACCGGGAGCTTGCACTGCTGCAGCATCACGTACAGCAGGTGCACGACACAATAGCGACGATGACGTCGGAGAAGAAATACGTCCCACCACAACCATTGCTCGTGTCGCCGCCTGAGATGGTGAAGAAGTATTTTAATTGTGATAATTGTAGTGCGACCTTCTTCCAGCCGGATCATCTGCAGAGTCATCTGCAGCAGGCGCACGGGCTGAAGCGTGCCATTGCGTCGAGCGGTAAGCAACACGAGCGGCTCCTAATATCAACGAGAGGCCACACCGCGGGGGATGAGGAACGGGAAGAGGAAGAATCAACGGATCGTGACGACGTGGACGATGGTTTTGATGAACTCGACTACACGTACGTACCGTACGGTGAGAATCGTACCGATATGCGCACCAATTCGGGTGCATCGGAAGCGACCGGTACGCAGGAGCAGCAACAGCAAGAGTTCCCCATGCCTTGTCGCGACTGCAACGAAATGGTCGAAAGCGCGAACGATCTGCTCGAGCACGCGGAAATGCACAGCAACGCCGCCCGGTTCGAATCACTGCACGAGTGTCAGTTGTGCGGGAAAAAGTTCTTCAACGAAACGCTCATCAAGCGGCACGTGCAGGAGCGCCATCGGGCCGAGCTAACCGAGACGTCCTGTGCGATCTGTGGCAAGCGGTGCAAAAGTCAGACAACGCTCATCAAGCACGCCTGGGACCATTCGCGGGACCGGGCACATTCGTGCTCGAAGTGTGGCAAAACCTTCCACCACCAAGCACGCCTCAAGCGGCACATGGATTCCCACCGCAGCAAGGCGGTCCGGTGCGAGATCTGTTCGCAAGAGTTTCCGGATGGGCGCACCCTGATGAATCACCGGCATTCGCACTCGAAATCGAACGAGTATCCCTGCACGGAGTGTGGCAAAACGTTCGGATCGCGTTCGTCGCAGCAGATACACATGCGCATCCACACCGGCGAACGGCCGTACGCGTGTCGGTTCTGCTGGAAAGCGTTCGCCGATGGGGGCACGCTCCGGAAACACGAGCGTATTCACACGGGCGAAAAACCGTACGCCTGTCCCGTGTGCCCGAAGGCCTTCAATCAGCGGGTGGTGCTGCGGGAACACATACGCGCCCATCACTCGCAGGCAGATACCAAACCGAATTCGGCCGAAAAACCAAACTACTGCTGTACGGTGTGTGCCAGCGGGACGACAGCACCGTTCGCCACACCGCGCGAACTGGTCCAGCATCTGATCGAGCACAGTGACACAAACACGGCCATGCAACGTCAGCCACCGACCTTCCCGCGCAAGTACAAGCGCAGACGAAAGCTTAAACCGCACGAACTCGAACGGCTGCTGAGCGGTCGGAGGAAGCAGAAAGCGAAACCGCAACAACAGCTGGATAGTGAAGAAGTTGAAGAAGAAGAGGAGGATGATGCAGAGGAAAACGACGAAGAGAGTGGTGCGGATAGGGACAAATATGTCGCGTATGGATGCAGTGGAAAGGCAAACCCACTACCACCACCAGCACGGCAACCGCAGGACAACATCCTGGACGATAATGGCATCAATATGTTGAGCAACGTTGTGCTGCTGCAGGAGGAAGGCGGCGATCCGATGGTTAAGCAAGCCCGTGGCAACAACAACTACAATCACCGCGCAGAATCTCCTCCACGCAAAAATCAGCCACCGGGAAGAAGAGCGAAAGCAGAACAGGGCCCGTCTCGGGCGGGTTCCACACAGAAGCGAGCGCCGGTGGCGAAGGGTAGAAGAAAAACGGCAGCGCCGCCTCTGGTGGCGGCGACGGCGGCAACGACGAGCGCTAGCAGCAGCCGGAAGAGAACGAGCTCGCACAGTCGAAAAGGTGGAAGCGGGATGAAAACGCGTGATAATATTACACTGGAAGAGCTGGAGGAACAAGAGCAGGAGATGGATGATAATTCGGTTGCCTCCAATCACTGCGTCATCTCGAACGTGATGGAAGCATTATTCAGTGGTCGTAATCGAAAATCGATGCTGTCCGAGATACCGTCCCATCGGATCTCGTCCGCAAGCTTCCCGCTTCTGGATGACGGCAACACGGACGATCCGATGCTGGACGAACCCGCACTGGAGGAGAACCCCAGCAGTAGCTGCGCCAGATTGGGCAGTGCTGCTGCTCAACCCGCCCGCCCGGAATTAGACGAACTAGCCAAGCTGATGGAAATAAAGCGCATAGATAAGTACGTTGAGGAGATTCTACGCACTCCGGTCAAGTCGAAGCCCTACCAAGGTGTTTGCCGACGGGGGAAAGCGAAAAACGCTCCATCCGGTAGTGGCCGACAACGGAAGACAGCATCGGCGCCGGTGAAAGCGAACGCGAAAGAAACGCCTCCTCCGGTCTTACGCAGCCAGCGACTTACGCGCCGTCAGCTCGAGCGGGAGGTCGAGCGACTGGCCGCAATGCTTCTAAACGACGGTATGATGGATGAAGACGAGAAGGTGGAAGAGGAGGAGCCGCTGCGATCAGTGAAGGTAGAGCATTCCCCTTTGCTATCCGATGACGAAGAGGAAGACACCGTGCCGGATGCGAACGGGCTGCTGTATGGAACCACTAATGCCACTACCTCAAACGAAATGGGTTTTACCTTCCGCTGTTCGATCTGTGCCGCCTGCTTCGATGACCGCACTCAGCTGATCCTGCACGTCCCGATACATATTTAA
- Protein Sequence
- MDQNTFPLWQVSATDTAVRDSGTSSVNNAASISALHYVPSVREKMKFINISSQMPRTNDSGSLYGTTTTTYLPVVNERRQQPLIQQQPRRVTALPPNATTTSMLNESILLQTHDGREYLVDESSIQNIDQTPPENLIYMTTTSTSTTPAVDEGVLSNHLAMDGDGGNYLMQNGGQTMDHQREEEEPEPDLQPAATTYAEECEVTEEIITDDWVQSQDEECVQVTVDQLGASAIVVEDDIAVPLDQDQYTLSRPYPCDFCSRRFRKKATLQNHLMAHSNDRPHVCKLCGAQYGRRCDLINHFRQHAYAVAEQDELALRGGGGEQDVDYDLSELMPRPDLPQQPKNRATRHSSDDEDMYVQNAMVDYNSQPPMQLISTTSYGGSISSSFANEYPFLQQTDSAGDMLIQQPLPPPSAPPPTLPLLGRKKAARRATAYIKNEPLDTAEPMVSEIRPLLGRRKGRISWLCQECGVSFAQLEALVSHKRNHHHHKEYVCKFCGAQYRELALLQHHVQQVHDTIATMTSEKKYVPPQPLLVSPPEMVKKYFNCDNCSATFFQPDHLQSHLQQAHGLKRAIASSGKQHERLLISTRGHTAGDEEREEEESTDRDDVDDGFDELDYTYVPYGENRTDMRTNSGASEATGTQEQQQQEFPMPCRDCNEMVESANDLLEHAEMHSNAARFESLHECQLCGKKFFNETLIKRHVQERHRAELTETSCAICGKRCKSQTTLIKHAWDHSRDRAHSCSKCGKTFHHQARLKRHMDSHRSKAVRCEICSQEFPDGRTLMNHRHSHSKSNEYPCTECGKTFGSRSSQQIHMRIHTGERPYACRFCWKAFADGGTLRKHERIHTGEKPYACPVCPKAFNQRVVLREHIRAHHSQADTKPNSAEKPNYCCTVCASGTTAPFATPRELVQHLIEHSDTNTAMQRQPPTFPRKYKRRRKLKPHELERLLSGRRKQKAKPQQQLDSEEVEEEEEDDAEENDEESGADRDKYVAYGCSGKANPLPPPARQPQDNILDDNGINMLSNVVLLQEEGGDPMVKQARGNNNYNHRAESPPRKNQPPGRRAKAEQGPSRAGSTQKRAPVAKGRRKTAAPPLVAATAATTSASSSRKRTSSHSRKGGSGMKTRDNITLEELEEQEQEMDDNSVASNHCVISNVMEALFSGRNRKSMLSEIPSHRISSASFPLLDDGNTDDPMLDEPALEENPSSSCARLGSAAAQPARPELDELAKLMEIKRIDKYVEEILRTPVKSKPYQGVCRRGKAKNAPSGSGRQRKTASAPVKANAKETPPPVLRSQRLTRRQLEREVERLAAMLLNDGMMDEDEKVEEEEPLRSVKVEHSPLLSDDEEEDTVPDANGLLYGTTNATTSNEMGFTFRCSICAACFDDRTQLILHVPIHI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -