Basic Information

Transcription Factor Domain

TF Family: zf-BED
Domain: zf-BED domain
PFAM: PF02892
TF Group: Zinc-Coordinating Group
Description: The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 9.5e-05 0.14 11.8 2.0 4 33 7 36 4 41 0.80

2 11 0.00036 0.51 9.9 2.5 13 33 43 64 36 70 0.75

3 11 0.00027 0.38 10.3 3.3 6 33 65 92 62 97 0.79

4 11 0.0013 1.9 8.1 3.1 6 35 93 122 90 126 0.76

5 11 0.00015 0.21 11.2 3.0 13 33 127 148 120 153 0.74

6 11 0.0027 3.9 7.1 3.6 7 37 150 176 146 182 0.72

7 11 0.00046 0.65 9.6 5.9 4 38 175 209 172 210 0.79

8 11 0.002 2.8 7.6 6.1 19 43 217 238 212 239 0.93

9 11 5.1 7.2e+03 -3.3 0.0 18 25 245 252 244 256 0.82

10 11 4.2 5.9e+03 -3.1 0.3 18 26 277 285 276 300 0.60

11 11 0.057 82 2.9 5.4 14 44 301 328 290 328 0.83

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	9.5e-05	0.14	11.8	2.0	4	33	7	36	4	41	0.80
2	11	0.00036	0.51	9.9	2.5	13	33	43	64	36	70	0.75
3	11	0.00027	0.38	10.3	3.3	6	33	65	92	62	97	0.79
4	11	0.0013	1.9	8.1	3.1	6	35	93	122	90	126	0.76
5	11	0.00015	0.21	11.2	3.0	13	33	127	148	120	153	0.74
6	11	0.0027	3.9	7.1	3.6	7	37	150	176	146	182	0.72
7	11	0.00046	0.65	9.6	5.9	4	38	175	209	172	210	0.79
8	11	0.002	2.8	7.6	6.1	19	43	217	238	212	239	0.93
9	11	5.1	7.2e+03	-3.3	0.0	18	25	245	252	244	256	0.82
10	11	4.2	5.9e+03	-3.1	0.3	18	26	277	285	276	300	0.60
11	11	0.057	82	2.9	5.4	14	44	301	328	290	328	0.83

Coding Sequence: ATGCGCAAAGAACATTTAAAGAACCATATCAGATTGCATACCGGAGAAACTCCGTACCAATGTACGTACTGCCAGAAGAAATTCACGCGAAAAGAGCATTTAACAAACCACACCAGATTGCATACGGGCGAAACTCCCTACCAGTGTTCTTATTGTCAGAAGAAGTTTACCCGCAAAGAACACCTCACGAATCACGTCAGGCTGCACACCGGCGAGACCCCCTACACGTGTACCTACTGTCAGAAGAAGTTTACGCGCAAAGAACATTTGACGAATCACGTCAGATTACACACCGGTGAGACTCCGTATCATTGCACCTATTGCGAGAAGAAGTTCATGCGAAAAGAACATCTTACGAATCATATCAGATTGCACACCGGAGAAACTCCCTATCAGTGCACGTATTGCGGGAAGAAATTCACCCGAAAAGAGCATTTAACAAATCATGTCAGATTGCATACCGGAGAGTCTCCCTATCGGTGTACGTACTGTAATAAGTCATTCACCAGAAAAGAGCACCTCAAGAACCACGTCAGATTGCACACCGGTGATTCGCCGCACAAATGCGAGTACTGCAACAAGACGTTCACGCGGAAGGAGCATCTCAACAATCACATGCGTCAACACAGTGGCGACAATCCCCACTGCTGCAACGTGTGCAACAAAACCTTCACCCGCAAGGAGCATTTGATCAACCACATGAGCCGGTCGCATACGGGCGAGCGGCCATTTCAGTGCGATGAGTGTGGAAAATCGTTCCCACTGAAGGGCAACCTGCTGTTCCACCAGCGTAGCCACACCAAGGGCCAGCCGATGGATCGGCCGTTCCGGTGCGATATGTGCCCGAAGGATTTCATCTGCAAGGGCCACCTGGTGTCGCACCAGCGGTCGCACTCGGGCGAGAAAAACCATCACTGCCCGCAGTGTAGCAAATCGTACGTCGAGCGGGGCAACATGCTGCGGCACATGAAGAAGACGCACCCGGATGCGGTCATCCCCGTGTTGCCGAAGCTGCCGCACATCAAGGTTGAACCGAAGTCTACCGGTAAGTGA
Protein Sequence: MRKEHLKNHIRLHTGETPYQCTYCQKKFTRKEHLTNHTRLHTGETPYQCSYCQKKFTRKEHLTNHVRLHTGETPYTCTYCQKKFTRKEHLTNHVRLHTGETPYHCTYCEKKFMRKEHLTNHIRLHTGETPYQCTYCGKKFTRKEHLTNHVRLHTGESPYRCTYCNKSFTRKEHLKNHVRLHTGDSPHKCEYCNKTFTRKEHLNNHMRQHSGDNPHCCNVCNKTFTRKEHLINHMSRSHTGERPFQCDECGKSFPLKGNLLFHQRSHTKGQPMDRPFRCDMCPKDFICKGHLVSHQRSHSGEKNHHCPQCSKSYVERGNMLRHMKKTHPDAVIPVLPKLPHIKVEPKSTGK

Sequence clustering based on sequence similarity using MMseqs2