Afar003242.1
Basic Information
- Insect
- Anopheles farauti
- Gene Symbol
- bab1
- Assembly
- GCA_000473445.2
- Location
- KI915045.1:6231620-6234589[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 2.2 3.5e+03 -2.6 0.1 29 37 234 242 234 249 0.78 2 3 5.1e-13 8.2e-10 37.8 0.0 1 45 486 530 486 530 0.95 3 3 0.021 33 3.8 0.8 4 20 659 674 658 674 0.93
Sequence Information
- Coding Sequence
- ATGGGTAGCAGCGAGGGACAGACGTACTGTCTGCGATGGAACAACCACAAATCGAACCTGGTCGAGATACTGGACGCACTGATCAAGATGGAGTGCTACGTCGACTGCACGATCTACGTCGACGATCAGGTGCAGTTCAAGGCACACCGGGTGGTGCTGGCGGCCAACTCGCCCTACTTCCAGACGATCCTGCAGGACGTCCCGATGGACCACTGCAGCATCCTGTTCCCGGGCGTCCAGGAGTTTGAGATGCGCGCCCTGCTCGAGTACATGTACACCGGTGAGGTGAACGTGACCCAGGCGCAGATCCCGCGCATCATGAAGATCGCCGAGCAGCTGGAGGTGAAGGGTCTGTACGATATGGCCGATCTGAAGGGTCGCTTCGACAAGATGGGCGATGTGGATCATCTGATGCGGGATCGCGATCCGGCGACAACGCTGCTCGCCAGCAACAACAACTACACCAGCAAGGCATCGTCCGGTTCGGCCAGTGCGTCCGGTGCCGCCGCGTCGGCTTCGTCCTCCTCGTGGAAGGATACGCCACCGACCGGTAGCAGTGGGGGCGGTGGTGGTGCTAGCAGCAGCAGCAGCCACTATTCCCACCACCACCAGCACCAATCGTCGCCGGTCATCTCGACGTCCACCAATATCTCGATCGCCCAAAGCAGCAGTTCCTCGCCACCGTACTCGTACAAATCGCCCTACTCCAGTCTCTACTCGCGCAGCCCCGGTACGGTGGAGCGTGATCGCGAACGGGAAGAACGTACCCGCGATCGTTCCTCCTCCTTCTCGCACACGACATCCACCTCGCCCCATCGCATCCAGTCCACGTCCGGTTCGTCGGCTTCATCGGTTTCGGCACAGATCGCACTACAATCGCAAGCCACCGGCGGTAACCACCATCAATCGGTTTCGCATCAGTCAACGGGCAGCTCATCGAGCGCCAGCTCCGCTCAACCGTCGACGGCGGCCGCGGCGGCAGCACTTGCTGCCGGTTGGCCCGGACTCGGACAGACGCAACTGCACAGCATGCTCAGCTCGGCGTACGATTCCAGCACCGATATGAACCCGCTCAAGCGCAAAAAGCTACAGTCCATGTCGAGTATGCTGCGCGATACCCCGATCCTGCGGAATGTACTCGCCCAGGCCAATCCGGCCGATTCGTCACAGTCGGCGGGTGGCGGTGTGTCGGGAGCGGGCGCCACGGCGACGTCCGTCGCCACGATACAAACCATCCAGAGCGGCATAAAGTCCGACCCGGAGCGACCGAGCAGTCATCACTCGAACGGTAGCGGATATAAGTCAATCAAGGAACCATCGCACTCACCGTACGCGGACAAATCCTTCGACGATGATCTGCTGGACTCACCGCACGCCTTCGGCGGAGACGCTAGGCTAGCCTCGTACGTCCCACACCAGCAGCAGAAGCCAGAATGGAAGCGCTACAAGCAGTACACGCGCACGGACATCCTGAACGCAATCGAGTGCGTGCGCAAAGGCATGAGCGCCCTGCAGGCCTCTCGCAAGTTTGGCGTCCCGTCTCGCACGCTCTACGACAAGGTGAAGAAACTCGGCATCACGACCGGTCGTCCGATCAATCGCGCCCTGAAGCGTTCACCGAGCTCCGGCAGCAGTCCCGCCTCATTCCCGTACGGGTTGAGTGGAGCGAGTCACATGTTTGGACCGGGCAGTGGAGCACCACCGCACGGTGGCGATCACCATCAGCAGCTTCCGTCGCAGTCGCAACAGCAAGACGAGGAAGCATCGCAAGCGGCAGCTGCTGCAGCGGCGGCCGCCGCTGCCATGGCCCACCACGAAGCGGGTCGTATGATAAAGCTCGAGCACGGAAGTCATCACGGACTGCCACCGACAATTCCGCACCCGGCCGCGGCCCTACTCGATCCTTCCTTCCTGCAGCAGGCGCTCGAAGCTCGCGGTGGAGACATCGCCGGACGGGAGGCACTCCATGCGATGGCATTCGCGGCGGCTGCACATGCGGCCGTGAATGGTATGAGTACATCGCCGGGTACGCACGGAACCGCCCGCTCACCGAGCCCGAGCGTGCTGATGAAGTACATGCGCTCGGTTTCGATGAGCTCCCCGGAGGACGATCGGCACCATCCGGTGCAGCAGCGTGAACGAGATCTTGCCGAAGGCCATCGGGACGACCGCCATCACCATAATGGGTCGGATCCGGTACGGGAAGTGTACGCACGCTCTCGTGATCTTCCCATGGAGCAAGACTCGATCGATGACGGTGGCAGCGAGTGCGAAGAGCGTCCCCCGAGTGGTCCCGGCATTCCCACCGAAGGTCAGGACGACCATGTCGAGGACTTGTCGATGGGGCCGAAGCGCGACTCGGAAGAACGACGAGACCCGTCCGTATCGCCGCCACCATCGACGGTCGTCAGGGCGGTGGTGCAACAACGGTCACGATCACCATCTCCGCAGCCACCGCCACCACCACCACCGTCGTCGCATCCACCCCAGCAGCAGGGTGTCATCGTGCCAGCGCCCGGTAAGTTGAAGGAAGACTACAACATCTCCATCAAGCGCGAAATCATCGCCGACAGTAACGCACCGTCGGAATCGTCCTAA
- Protein Sequence
- MGSSEGQTYCLRWNNHKSNLVEILDALIKMECYVDCTIYVDDQVQFKAHRVVLAANSPYFQTILQDVPMDHCSILFPGVQEFEMRALLEYMYTGEVNVTQAQIPRIMKIAEQLEVKGLYDMADLKGRFDKMGDVDHLMRDRDPATTLLASNNNYTSKASSGSASASGAAASASSSSWKDTPPTGSSGGGGGASSSSSHYSHHHQHQSSPVISTSTNISIAQSSSSSPPYSYKSPYSSLYSRSPGTVERDREREERTRDRSSSFSHTTSTSPHRIQSTSGSSASSVSAQIALQSQATGGNHHQSVSHQSTGSSSSASSAQPSTAAAAAALAAGWPGLGQTQLHSMLSSAYDSSTDMNPLKRKKLQSMSSMLRDTPILRNVLAQANPADSSQSAGGGVSGAGATATSVATIQTIQSGIKSDPERPSSHHSNGSGYKSIKEPSHSPYADKSFDDDLLDSPHAFGGDARLASYVPHQQQKPEWKRYKQYTRTDILNAIECVRKGMSALQASRKFGVPSRTLYDKVKKLGITTGRPINRALKRSPSSGSSPASFPYGLSGASHMFGPGSGAPPHGGDHHQQLPSQSQQQDEEASQAAAAAAAAAAAMAHHEAGRMIKLEHGSHHGLPPTIPHPAAALLDPSFLQQALEARGGDIAGREALHAMAFAAAAHAAVNGMSTSPGTHGTARSPSPSVLMKYMRSVSMSSPEDDRHHPVQQRERDLAEGHRDDRHHHNGSDPVREVYARSRDLPMEQDSIDDGGSECEERPPSGPGIPTEGQDDHVEDLSMGPKRDSEERRDPSVSPPPSTVVRAVVQQRSRSPSPQPPPPPPPSSHPPQQQGVIVPAPGKLKEDYNISIKREIIADSNAPSESS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00101774;
- 90% Identity
- iTF_00100405;
- 80% Identity
- iTF_00100405;