Aepi011668.1
Basic Information
- Insect
- Anopheles epiroticus
- Gene Symbol
- -
- Assembly
- GCA_000349105.1
- Location
- KB671516:56196-59720[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 9.3 5.7e+02 0.7 0.2 12 23 225 237 221 237 0.81 2 15 0.024 1.5 8.9 2.0 6 23 246 263 246 263 0.98 3 15 0.077 4.7 7.3 0.2 1 23 269 292 269 292 0.88 4 15 0.00046 0.028 14.3 1.5 1 23 300 322 300 322 0.93 5 15 0.0007 0.043 13.7 0.7 3 23 332 352 330 353 0.93 6 15 1.1 65 3.7 2.0 2 22 410 430 409 432 0.88 7 15 4.1 2.5e+02 1.8 1.9 6 23 442 459 437 459 0.89 8 15 3e-05 0.0019 18.0 0.7 1 20 465 484 465 488 0.94 9 15 0.00018 0.011 15.6 1.2 1 23 496 518 496 518 0.95 10 15 0.011 0.68 9.9 2.7 2 23 527 549 527 549 0.96 11 15 0.00054 0.033 14.1 0.4 2 23 556 577 555 577 0.96 12 15 1.7 1e+02 3.1 7.1 1 23 587 610 587 610 0.96 13 15 0.00018 0.011 15.6 1.7 2 23 617 638 616 639 0.94 14 15 0.00035 0.021 14.7 0.5 2 23 646 667 645 667 0.95 15 15 0.018 1.1 9.3 1.4 1 23 673 696 673 696 0.91
Sequence Information
- Coding Sequence
- ATGGACAATCAAGCGGTCCAGCACGACCAAGCTGCCGGCGATATCTGCTTACTGTGTCAATCAAGCAGCACCAATAGGCACTTGTTAACTGACCTCGTTGACACCGGTCAAGACAGAAAAGTGGATGTTATCTGTAAACATTTCTGGCTTTCGGAGGCTTCATGCTCAGCACGATACATCTGCGCGGAATGCTGGAACGTGACATATAGGTTTCATAAATTCTACCTCGAAATTGAACGATTGCACTCGGTGGTCGATCCGACTGCTGCTAAGCAGAAACTATCGAATACCACTGAAGCAAAGCAACCATCCGGCAGGGCGACAACATCCGAGCAGTTTGTTTGGCTGGACGGGGAGAATGAATTCATCACGAATGTAAACGAAGTGTTCGTAAAGGAAAACTGGCCCGATAGTGAGAACGAACTAGTCTCGCTCAAACGGGACGAAGAGTCGGACGAGGAAGAGTCAAACATTCCACTTGCCAAGCTCAAGCAGGCCCAAACTAGCGCTGTCGACAGCGAAACACTGAACGAAACGTCCGAGCGACCCTCCCCATTTCCCGGCATCGGTTTATCCTTGTGCCGAATTAATGGTAACGCGCTCGAGCTAATCTGTCACGACTGTTACCGCCAACAAAGCAAAGCGACCGCGCCAAGTGCGGACACACGCTTTACCTTTGCCGCCCTGCTGAAGCACTACCGGAAGGTGCACGGCAAGCCGGGCTATGCGGTGTGCTGCAATCGCAAGTACACGCGGCGAAGATCGCTCAAGATGCACCTGCTGTCGCACGGGCGCAAGGTAGTGTACCGGTGTCTGCCGTGCGGCATCAAGTTTCGAAAGCAGGAATCGCTGGACGAACACAATCTGCTGATCCACACCGCGGAGGAGGAGAAGCGGTACAGGTGCGACAAGTGCGAGAAAGCGTTTGCAACGGAGCACCTGCTGCACTCGCATGGCGCATGGCATGAGAATGTGGCAAAGAAGAACATTATCTGCAGTGTGTGCAAAACGTTCTTTGCCAGCCAACCGTCTCTGGAGAAGCATCGTGCCTTGCACCATCCCTCGACGGCAGAACACTCTGAAAATAACTCACCGTCCACAAAACTCGACAGCCTTTCCGCCGACAATCCTGATGAAGAAAAACTGGTTGCGACCCAGTACCGAACGCGTCTTTCGGAAACGGAAATATCCAAGCAGGAGGAGTTGATCAAGCGCCACTGTCTGCTGCACTGCAGCCAGTGCGACTACTTTGCGGAGAGTTTTTCCCTGCTGAAGCAGCACGTGGGGCATGAACACGGTTTGCGCAGCTGCGACGTGGTGTGCTGCGATCGCACGTACAGCAAGCGCCAGTCACTGTACGAGCACTGTCTGGTTCACGAGAATCCGGATTGCTTCCGGTGCGGTGTTTGTGGCAAGCGCTACTCCAGCAGCCGCAGCCTGCAGAATCATAGGTGGCGCATTCACACACCAGCGGCAGAGCGCCCGTTCCGGTGTGACGTGTGTGGCGAAACGTTCGTGAAGGACTATCTGCTTAAACAGCATCTGGTGCATCATCTGGCGAAGCACAAGAAGCTAAACTACTGCAGCGAGTGTGAGCGCTCGTTTACGACAGCAACCGTGCTGAAGTGTCACCAGCAGACCTATCATGGCGGTGGCTATAGCCTGATCTGTGATATCTGTGCGAAGGGCTTCAACAGCCGGACGATGTTCGAAAACCATCGGCTTACCCACTCGGTCGAGGGCACGTCACAGTTGAAGCATCAGTGCGAGCAGTGTAAGAAGTGGTTGCGAAATAAAAAATCCTACCAGCAGCATCGCATACGGTGCCACGCGAACGACGGTCCGGTGACGTGCAAGTTTTGCGGCAAGGCGTCGGTGAATGCAAGCGCACTTAAATCGCATATCCATCTGCACCATGCGGCACGGCCAGAGCTACCGTGCACGTTCTGCGGGAAGCGCTTCAAGACGGCGCTGCGCCTACGGGAGCACGAGGCAACGCACACCGGCACGGTACTGTACCGGTGTCCTTGGTGTCCGCGCACCTTTGCCTGCGGCTCGAACATGTACAAGCACAAGAAGGCTGGGCATCCGCTCGAGTGGGCCGCCTCGGTGAAGAAACGGTTCGGCGAGCGATGA
- Protein Sequence
- MDNQAVQHDQAAGDICLLCQSSSTNRHLLTDLVDTGQDRKVDVICKHFWLSEASCSARYICAECWNVTYRFHKFYLEIERLHSVVDPTAAKQKLSNTTEAKQPSGRATTSEQFVWLDGENEFITNVNEVFVKENWPDSENELVSLKRDEESDEEESNIPLAKLKQAQTSAVDSETLNETSERPSPFPGIGLSLCRINGNALELICHDCYRQQSKATAPSADTRFTFAALLKHYRKVHGKPGYAVCCNRKYTRRRSLKMHLLSHGRKVVYRCLPCGIKFRKQESLDEHNLLIHTAEEEKRYRCDKCEKAFATEHLLHSHGAWHENVAKKNIICSVCKTFFASQPSLEKHRALHHPSTAEHSENNSPSTKLDSLSADNPDEEKLVATQYRTRLSETEISKQEELIKRHCLLHCSQCDYFAESFSLLKQHVGHEHGLRSCDVVCCDRTYSKRQSLYEHCLVHENPDCFRCGVCGKRYSSSRSLQNHRWRIHTPAAERPFRCDVCGETFVKDYLLKQHLVHHLAKHKKLNYCSECERSFTTATVLKCHQQTYHGGGYSLICDICAKGFNSRTMFENHRLTHSVEGTSQLKHQCEQCKKWLRNKKSYQQHRIRCHANDGPVTCKFCGKASVNASALKSHIHLHHAARPELPCTFCGKRFKTALRLREHEATHTGTVLYRCPWCPRTFACGSNMYKHKKAGHPLEWAASVKKRFGER
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -