Aepi010643.1
Basic Information
- Insect
- Anopheles epiroticus
- Gene Symbol
- -
- Assembly
- GCA_000349105.1
- Location
- KB671698:47-3318[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.00023 0.014 15.2 1.9 2 23 393 414 392 414 0.97 2 12 1.6e-06 0.0001 22.0 0.6 2 23 421 442 420 442 0.98 3 12 0.02 1.2 9.1 1.8 1 23 452 474 452 474 0.96 4 12 0.34 21 5.2 0.2 3 23 499 526 494 526 0.80 5 12 0.27 16 5.6 0.3 1 16 560 572 560 580 0.74 6 12 9.1e-05 0.0056 16.5 0.2 1 20 592 611 592 612 0.97 7 12 0.0019 0.12 12.3 1.0 2 23 621 642 620 642 0.97 8 12 3.5e-05 0.0021 17.8 0.7 2 23 648 669 647 669 0.96 9 12 0.86 52 4.0 3.4 3 23 679 699 677 699 0.93 10 12 0.0001 0.0063 16.3 1.7 2 21 706 725 705 726 0.94 11 12 0.00064 0.039 13.8 3.2 1 23 737 759 737 759 0.98 12 12 6.4e-05 0.0039 17.0 2.2 1 23 765 788 765 788 0.98
Sequence Information
- Coding Sequence
- CTAAAACCAGCAGCACAGCCTTGCATCTGTAGGGATTGTTGGACCAGCATACACGATTTCCATCTATTCTACACCAAGCTGGAGAGTATTCACAGTGATGAGATAGACGCCGTGAATTCGACCAAGCAACAAAttactgaactagaagtacaagTACCACATCAAATGCAAGAGTGTGTTTTTGATGAGCACGAAAGCAAACATACAATTGACACTGGCACGAAAATAATAACTCCACAGGTGGTGGCGACATACTGTACCACAGATGCATCTGAGTCCTCAAACACATCAGAAAAGAAGCATTTTGTAGAGGTGGAAGATTATGCTAGCAACgatgatgatgatgatcatttcgtaggccatagtccattacatgatgatgatgatgatCATTTAGTTGGCTATAGTCCATTAGACGACAATGTGCTCGATGATGATACGCTTAACACCGAAAGCAAGGAAATATTATTATtaactacaaagtctacaaaaagcaacgcaaaacaaccagcagtccgtggcagaggtcgtcagccaaagttgaaagggcagcagccaagtgaaactttaaacaaaatagcgaaacgtcccagaggacgtccactaactaaaacgtctacaagaagcaacgcaaaacaacctgcatcccgtggcagaggtcgtccgccaaagctgaaagggcaacagccaagtgaaactttaaacaaaatagcgcaacgtcccagaggacgcccacCAAAACGGAAACAGGATAGTTCGGACGATGAGCAAAAAGGTGAAGAACCACAAATTGTTATTCATACGTCAGTAACAGGTACAGGAGCATCCATTAAGCGACGGAGGGAACGTCCTCCGAAAAAATCATTTGCAACAGATTCCGTACAGGACATCGCTGCAGAACATTCCAATAATGAGGTAAAGAACGAAATTGTTAGCGACTATCAGCCATCGGCCGAGGAAAGCACGATTGAAAGTGAAAGCGAGCTGGACAATGATTCAGACTATGAGGTTCAAAGGCAGCCGCCAGTAAAGCGTAAGAAGAGTGGTCGGGATGAGCGAATATTCAAGTACGTGGACGAATTTTGTTGCCACTATTGTGTGGAAAATGTCCCGTTCAAACGGTTCTACGATGCTGACCGTCACTATAAGCTGGTACACAGCGAGCCGGGCTTTCTAAAGTGCCCAAAGTGTGACAAGAAATGTTTCACGGCCGGTATGTTCGTAAGCCACATGGAGACGCACGAAGATCCGGaaaaaaaTAAATGCAACATTTGCGGCAAAATTACGGATAGCAACGTCTCGCTCAAGAAGCACATGCGTGTGCATTTGAAGCAATTAGAGGAGAATTTGCCGTTCCCTTGCAGTCGCTGCAAACGAAAGTTTGAAACGGAGGAGCTGCGAAACAAGCATGAAAAGCTGCACGTTCCCAAACCGCCCGTTAAGCGCGAAAGGGGGCCCGATCTGGAGCTGCTTGCGTTCTACAAATGCATCTACTGTGATGTGTGCGAAGAGCAAAGTCCTGAATCAACCTCGTTCGAAAACTTCTGGGACCTGAGGGTACATATGCAGCAAGAGCACAACAAGGGAGCATACCTGAAGTGTCCAatttgcagcaagcggaatttttgcagacaacatcttatcacgcatatcgatatgcacaacaatccggagaagtatcgGTGTGAAGTTTGTAAGGAAGTCTTTCAGAAGCTAGATTTGCATATGATCAAAGTCCACGCGCCCACCACTGCGATACCGACGGATAAAAGGTACAAATGTGAGCAATGTGGACGAATGTTTAACTTCCTGGCCCAATTGAAGATACATCTCGACTGCGTCCATGGCTCGAAAGATGTTCGTTGCAATGTGTGCAATAAATACTTCAATCTGAAATCCTTTGAAGCACACAAGCGAACGGCTCACACCGATCAGATGCTGATGTGCGAACATTGTCCTAAATTGTTCAAATCTAGTGGTGCGTTGAAAATTCACGCACGCTCACATGACGATAGTTTGGCCCAGTTTACGGCCTGCAAGCTCTGCAACAAGCAGATGAAACATGCTAACCTCAAGAAGCACATGACCTCACAGCACTCCGAGGATGGACCGGTGAGCTGTGAGCTGTGCGGCAAATCGTTCCGCAGCATGTTTCACATGAAGCGGCACCAGAAGAACACCTGTAAGGCGACGATCGATTCGCGTCCACACAAGTGCGAAGTCTGCGGCAAGGGTTTCCACACTAAGCTGACTATGGTGGAGCATATGACGACGCACACGCGCACCAATCAGTATCAGTGTGCGTTCTGCTTCAAATCGTTTGGTTACATCTCGAATCTGCAAAAGCACCGGAAGAAGGCGCATCCACTCGAGTGGCAAGAAATACAGGCTCGCCCCGAGGAAGGCATCGCGTCGGTTATCATGGTACGAAACTAA
- Protein Sequence
- LKPAAQPCICRDCWTSIHDFHLFYTKLESIHSDEIDAVNSTKQQITELEVQVPHQMQECVFDEHESKHTIDTGTKIITPQVVATYCTTDASESSNTSEKKHFVEVEDYASNDDDDDHFVGHSPLHDDDDDHLVGYSPLDDNVLDDDTLNTESKEILLLTTKSTKSNAKQPAVRGRGRQPKLKGQQPSETLNKIAKRPRGRPLTKTSTRSNAKQPASRGRGRPPKLKGQQPSETLNKIAQRPRGRPPKRKQDSSDDEQKGEEPQIVIHTSVTGTGASIKRRRERPPKKSFATDSVQDIAAEHSNNEVKNEIVSDYQPSAEESTIESESELDNDSDYEVQRQPPVKRKKSGRDERIFKYVDEFCCHYCVENVPFKRFYDADRHYKLVHSEPGFLKCPKCDKKCFTAGMFVSHMETHEDPEKNKCNICGKITDSNVSLKKHMRVHLKQLEENLPFPCSRCKRKFETEELRNKHEKLHVPKPPVKRERGPDLELLAFYKCIYCDVCEEQSPESTSFENFWDLRVHMQQEHNKGAYLKCPICSKRNFCRQHLITHIDMHNNPEKYRCEVCKEVFQKLDLHMIKVHAPTTAIPTDKRYKCEQCGRMFNFLAQLKIHLDCVHGSKDVRCNVCNKYFNLKSFEAHKRTAHTDQMLMCEHCPKLFKSSGALKIHARSHDDSLAQFTACKLCNKQMKHANLKKHMTSQHSEDGPVSCELCGKSFRSMFHMKRHQKNTCKATIDSRPHKCEVCGKGFHTKLTMVEHMTTHTRTNQYQCAFCFKSFGYISNLQKHRKKAHPLEWQEIQARPEEGIASVIMVRN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -