Aepi008830.1
Basic Information
- Insect
- Anopheles epiroticus
- Gene Symbol
- -
- Assembly
- GCA_000349105.1
- Location
- KB671526:154042-156524[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 6.8 4.2e+02 1.2 0.7 3 21 283 301 281 302 0.77 2 14 0.021 1.3 9.1 0.7 1 11 318 328 318 330 0.92 3 14 1.7 1e+02 3.1 4.1 3 23 396 417 395 417 0.91 4 14 0.00099 0.06 13.2 0.5 3 21 432 450 430 451 0.94 5 14 1.3 79 3.4 1.4 1 22 458 479 458 482 0.88 6 14 9.8 6e+02 0.7 0.3 9 23 518 533 508 533 0.84 7 14 0.0025 0.15 12.0 0.3 1 20 557 576 557 577 0.96 8 14 0.0059 0.36 10.8 0.1 1 23 585 607 585 607 0.97 9 14 0.00061 0.037 13.9 3.3 1 20 613 632 613 635 0.94 10 14 3.6e-05 0.0022 17.8 2.1 1 23 640 663 640 663 0.95 11 14 6.3e-06 0.00038 20.2 0.2 2 23 669 690 668 690 0.96 12 14 1.6 95 3.2 0.7 6 23 703 721 696 721 0.91 13 14 6.5e-05 0.004 17.0 1.1 3 23 729 749 728 749 0.99 14 14 0.00012 0.0074 16.1 0.1 1 22 755 776 755 776 0.96
Sequence Information
- Coding Sequence
- ATGCCTCCCAAGCACTGTCGAATATGTTACAAATCGGATAACGACGACCTAATATCAGTACGGCTAAAGCAGAACAGCGTTTCGATCGAGGAAATGATTCTGTCCATCACCGGCATCACCGTGACGGCCGACAGACGTTTGCCACAAAACATTTGCCTCGAATGTTTGGATCGCTTGAAGGCCGCGTACGAACTGCGACAGCAATGCATCCAGACGAACGACTGGTTGTGCGAGAAATTGTCGGTACCCAAAGATAACATTGAACATGAAATTATAAAAGAAACAAAGGATGTACCTCTATCTACCGAGTTATCGAAGCAAGGGGGCGAAGAAGAAATGACTGAGAGATCCATCAAACATTATGATGAAGAAATGGGTCACAAATCACGTCCCGGACAGAACCAGCTAGATGTTGGTGGAGATGGGTACAACTTTGTGAAGGATAATACAGACGTTAACCAAGAAATCGAAATGATAGAATGTTTGGACAATGTAGAAGAACTGGAAGTGAGGGGACCGTCACTACAGAAGCTTGAGATAGAGATCGACACTGGTGAGAACGAATCGAACGCTGAACACGAGTATATGTTGCCAACAATAATCGATGAGCAACATGAGCTAACAATCGAAATGAATTTAAGTGATGAATCAACCATCGATCTAGAGGTGGAACCTAGCGCAGAAGAACAATATGATGATGAATGGGAACAACACGGAGAAGATCCAATCATTTCGCAACCCCGAACAAATAAATCACGGAAGATGTTATGCCGTATATCGAGGAACGATTTGATCATCCGGGCGACCGAACCGGGATACTTAATTGTGGAACTGCGTCAGTACCGTTGCTGTTGTTGTGCGGGACTGTTCACAACCGAGGAAGAGCTGCAAGTACATTTGAAAGAGAAAGGCGAACAAAATAAAGTGTCCAATCCTGACCCAAACGTACGGTACGTTTGCGAGTACTGTGGGAAACACTTTAAGCTTTGGTTGGTTTACATGTGCCACAAGCGTTTACGCGAGCAACGTCAGTTTTACATGTGTCGACTGTGCAATGTACTGCTTGATTCGGCCACACGCATGATATCGCACATGTTAGTATCAGAACAGCACGCAAACTACTTTAACCTGCCGCGGGAATGTATTGCCGATCGGTACACAACGATAATGCTGTCCGGTGAACGGTGCTGCTGCTGTAAAAAGTATTTTGATGAAAACGAGGCATTGATGGAGCACGTGCGACGTTCGCATCCTTCAACCACGGATGCAATGGTGGAAAATATGCCTTACGGATGCGATGTGTGCGGACGACGGTTTAGGAGCACGGATCGATTGGAACATCATCTTCAGTACACGGTGGACGTTAGACAGCACTACTGTAAACTGTGTGACTTTCAAACGTACAATCCACGGCGCATGGAGCTGCATATGTACAGTGGCATTCATAGGGATACGGGCATGCCGGCAGCAATCGAACTTAAACCGCTCGAAAACAAACCTCTCAAGAGCAACCCCGTACGGTGCTGCTGTTTCTTTGGATGTTCCCAAAATATATTCACCGATGAACCAGCTCTGCAACTACACATTCAGGAAAAGCACCGGGAAGCGCTGGAGCTTAATAAGGCACGAGCGGAACAGATAAGCAAAGTCTTACGATCAGAAATGTGCTTTAAATGTGATAACTGCTACCTTGTATTTAAAGACACCATCTCCCTGAACGCGCACCAGACGCCACGACGCATTAGGCAAGAGTATGTGTGCTCCGTGTGCGGGGTAAGTAAAAGAAGTCGCTCCGATCTGGTGATTCACGAGCGAGCGCACACTGGTGAAAAACCTTTTCCCTGTGATCAATGCAATAAAACGTTTGCGTCCAAGAAAACGCTCGCTTCTCATCGTAGCTGTCACACTCCCGGGCTGCACACGTGCGAAGTGTGTGAAGCGAGGTTTAATCGCAAGGAAAATCTCAACCGCCACACCATGCTCAAGCACGGCAAGGCAACAATTCCGTGTGATGTCTGTGGAAAAATGTTTAAAACCACTACTACGCTCAACATACACATGGTATCACATACGGGCGAAAAGCGGTTCCACTGTCGGATGGAACCGTGTGACAAGCGGTATGCTACGGTGGCCGATCGTCGGCGGCACGAAATGTCGGTACACACGCAGGAGCGACCGCACGGGTGCGCGTACTGCAAGGCTACGTTCACCCGGAAACGCCAGCTCACGATACACGAACGTCGGCATACCGGGGAGAAGCCGTTCGTTTGTCCGGACTGTGGGAAAGATTTCATCGATGGGTGTCCGTTGCGGGTGCATATGCGCAAGGGGTGTAAATCCAAGCCGTAG
- Protein Sequence
- MPPKHCRICYKSDNDDLISVRLKQNSVSIEEMILSITGITVTADRRLPQNICLECLDRLKAAYELRQQCIQTNDWLCEKLSVPKDNIEHEIIKETKDVPLSTELSKQGGEEEMTERSIKHYDEEMGHKSRPGQNQLDVGGDGYNFVKDNTDVNQEIEMIECLDNVEELEVRGPSLQKLEIEIDTGENESNAEHEYMLPTIIDEQHELTIEMNLSDESTIDLEVEPSAEEQYDDEWEQHGEDPIISQPRTNKSRKMLCRISRNDLIIRATEPGYLIVELRQYRCCCCAGLFTTEEELQVHLKEKGEQNKVSNPDPNVRYVCEYCGKHFKLWLVYMCHKRLREQRQFYMCRLCNVLLDSATRMISHMLVSEQHANYFNLPRECIADRYTTIMLSGERCCCCKKYFDENEALMEHVRRSHPSTTDAMVENMPYGCDVCGRRFRSTDRLEHHLQYTVDVRQHYCKLCDFQTYNPRRMELHMYSGIHRDTGMPAAIELKPLENKPLKSNPVRCCCFFGCSQNIFTDEPALQLHIQEKHREALELNKARAEQISKVLRSEMCFKCDNCYLVFKDTISLNAHQTPRRIRQEYVCSVCGVSKRSRSDLVIHERAHTGEKPFPCDQCNKTFASKKTLASHRSCHTPGLHTCEVCEARFNRKENLNRHTMLKHGKATIPCDVCGKMFKTTTTLNIHMVSHTGEKRFHCRMEPCDKRYATVADRRRHEMSVHTQERPHGCAYCKATFTRKRQLTIHERRHTGEKPFVCPDCGKDFIDGCPLRVHMRKGCKSKP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -