Aepi004503.1
Basic Information
- Insect
- Anopheles epiroticus
- Gene Symbol
- topi_1
- Assembly
- GCA_000349105.1
- Location
- KB672198:439714-443537[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 7.7e-06 0.00047 19.9 0.8 2 23 246 268 245 268 0.96 2 16 1.8 1.1e+02 3.0 1.3 2 23 304 326 304 326 0.91 3 16 0.00046 0.028 14.3 4.8 1 23 340 362 340 363 0.95 4 16 1.5 94 3.2 0.5 1 23 404 427 404 427 0.90 5 16 3.2 1.9e+02 2.2 1.1 2 23 434 456 433 456 0.79 6 16 5.5e-05 0.0033 17.2 1.7 1 23 488 510 488 510 0.98 7 16 1e-05 0.00062 19.5 0.9 1 23 516 539 516 539 0.97 8 16 5.3e-05 0.0032 17.3 0.7 3 23 547 567 545 567 0.98 9 16 0.0011 0.067 13.1 0.7 1 20 573 592 573 594 0.92 10 16 0.14 8.7 6.5 0.2 2 23 635 656 634 656 0.93 11 16 0.00022 0.014 15.3 4.8 2 23 663 684 662 684 0.97 12 16 7e-08 4.3e-06 26.3 0.7 1 23 691 713 691 713 0.98 13 16 0.00016 0.01 15.7 2.1 1 23 719 741 719 741 0.97 14 16 1.7e-06 0.0001 22.0 1.5 1 23 772 794 772 794 0.98 15 16 2.8e-06 0.00017 21.3 0.5 1 23 800 822 800 822 0.98 16 16 3.7 2.3e+02 2.0 2.2 1 23 828 850 828 850 0.92
Sequence Information
- Coding Sequence
- CATGTCATTCCATCGAATAATGATGTAGAGGAAATCTACATTGTTAAACAAGAAGACGATTTACCGGAGTGTGATTATAACCTGCTGGATTCTGGAACAAGTTCTTGTCTTACCACAGCTTTTATGAACGAAGATGAGGAAATCAAGATAGAACCCGAAATCAAGAATGTGCAATTCACACAGGGAGATGGCTTTGAAACGTGCCCATTTAAGGCAGATAATAGCAATCAGGCTGAAAAAGCACAAAGCTGCAACCTTTTACATTCTATAGAACAGCAAGCAATCCAAAACGAATTGGGGAGaaaaaaaCTACACGAAAAGAACGATGAATGGTCTGTGGTGAATGCTGAGCATAATTCATCAATTGTAGCGGAAGATGGTACAGTCTCTTCGTATAAAGGCGGCTATGAAGATACATCGGACTTTATAGAAAACAATTCGTACGTGGATTATGATCCAATTGAACAGAATGAACATCGATTAGACCACACAAAGGTTGCTTCTGCGGATGATCGTGTAAAATGTGTGGCCGGTAGCGATGATAACGAAAAGATGCATTTCAAGAACTTGTTTTCAGAAGATCTACAAACTTTAAAGAAGAATAAGGTTGGAAGACCACGCAAAGAATATCTCGAGGAGTGGTTGGGAACTTCCAAAAGGCATAACAAGAGTCGTCCACTTCAAGCAGATGAGGTGAACACAGAGACGGATGAAGCGACAAAGGAAGATATAACACAGTGTTACATTTGTGGAAAAACATTCCCATTCCGCATAGATTTGCGTAGACACCTTCAAAGCAATCACGCTAAAGATATTCCATTCAATTGTACCATGTGCGTTTCGGAGACAATCACCAATTTGCATCGTTTAAACTTACATTATCAGCAGCATGATCAAACATTAAAACGACGTTGCCTCTATTGCCCCGCCCGTTTTTCATGTGGTCAAGCTGTTAGTAGACATATGCGCAATTTACATCCGCAGCAATATGATATTCATTCGAACAAAAATAAGCGATTCGTATGTCGTTACTGTGCGCAAAGGTTTACAAAAAAGTATGATCTAGAAAAACATGAAAAGAAACATCACGTCGAACAGTCGCATGAAGAGGAGAAGCGTGAGTTGATGTGCTACATTTGCACTGAATTTATAGGAAAAACGCGGGAAGATCTTAATGACCATCTTAGTTTTCATTCTGACTGGCTTCCGTATCGATGCGACAAATGTGATGATAAGATGATAAACTCAACGAAAGTCCTTGGAGAGCACCTTCGCAAGCACGCTGCGGGCCTAGCTATCAAGTGTGCTTACTGCGAGAAGCGTTATGCGGCGTTAGCTGACTGTCAGCACCACGAAGAGCGTGCACACCCGCAGGAGAAGCAGCTAGATGAGCTGCAAGAAGCCAAAATACAATCTGAAATACACGATACAAAGATTGTTGTGGTGGACGGACAGAAACGATTTCAATGCTCAAGCTGTGATCGGTCGTATACCTTGCTTAGTACTCTTCGCCGCCACCAGACCATTCACACGTTAGAAAACAAATTTGAGTGTAAATACTGTGGTAAAATGTTTGACAAAGCGACCGCCCTGCAAATGCATGAGAAACGCAATCACGATGCTAATAGCCCCTATGGTTGTGATGTGTGCGGTAAACGATTCAAAGAAACAAGCAGGTTGATTGATCACCGTCGAACACATTCTGGAGAGAAACCGTTTATTTGCGAGGTGTGCGGTAAATGCTTCCGAGTACGGCAAGTGTTGAGAGAGCATAAGCTTAGCTGCTTTGGACCAGAAGCTAACCAGCCATGTTACTGTGTTTTCTGTGAGCAAACATTCGATACTCTTTCGATTGCGCTAGAACATGTTAAGAATTCCCATGAGACGGATATATTGGATAAAAAGTGTCGTTATTGTGATCTAATCTTTCGGGAAGCAGAAGTATTGGTTGAACATGAGTTCCGCCATTCGTTACCTGGTATCATTACATGCATGGTGTGCAATCGCATTTTTAAACATCATAAAAATCTCATGCGCCATGTTAAAATGCACGCGGATCAGCCAGTACCGTACATGTGTGATTTGTGTGGCAAAACTTTTACCCAGAAAGGTTCACTAACCATACACCGTCGTATCCACACAGGCGAACGTCCGTTCTCGTGTCAGCTGTGTCAGAAAGGATTCGTCGATAAGAAGGAAATGCGTCGGCATTATACATCACATTTCAATCCGCAGAGCAAACTCTACATACCGAACGCACATGCTATAGCAATGCCTCCAGAAGCCGGTCCCACTGGCAAGAAGTATAAAACGTATAATTGCAAAATCTGCAGCCGACAATTTACATCCAGCTCGAATCTAGCAAAGCATGTTACTACTCATACCGGTGAAAAGAAGTATGTTTGCGAGTTCTGTGACAAAAGATTTAGTCAAGGTGGTCAATTAACTGTACACAGGCGTATACACACGGGAGAGCGTCCTTTTGCATGTGAAAATTGTGGCGATAGATTTTTGGATGGAAGCAGCTACAAACGCCACAAAACACATCACCTATGCCGCACAATATCGTCTGCGTCAGATGTACCTAATGGTGTTGAAGAATCCTCCTTATCTATTTCATTTCCCGAGTCTGTGCCAGTTACTAAATCAGGAAAATCTCAGTAA
- Protein Sequence
- HVIPSNNDVEEIYIVKQEDDLPECDYNLLDSGTSSCLTTAFMNEDEEIKIEPEIKNVQFTQGDGFETCPFKADNSNQAEKAQSCNLLHSIEQQAIQNELGRKKLHEKNDEWSVVNAEHNSSIVAEDGTVSSYKGGYEDTSDFIENNSYVDYDPIEQNEHRLDHTKVASADDRVKCVAGSDDNEKMHFKNLFSEDLQTLKKNKVGRPRKEYLEEWLGTSKRHNKSRPLQADEVNTETDEATKEDITQCYICGKTFPFRIDLRRHLQSNHAKDIPFNCTMCVSETITNLHRLNLHYQQHDQTLKRRCLYCPARFSCGQAVSRHMRNLHPQQYDIHSNKNKRFVCRYCAQRFTKKYDLEKHEKKHHVEQSHEEEKRELMCYICTEFIGKTREDLNDHLSFHSDWLPYRCDKCDDKMINSTKVLGEHLRKHAAGLAIKCAYCEKRYAALADCQHHEERAHPQEKQLDELQEAKIQSEIHDTKIVVVDGQKRFQCSSCDRSYTLLSTLRRHQTIHTLENKFECKYCGKMFDKATALQMHEKRNHDANSPYGCDVCGKRFKETSRLIDHRRTHSGEKPFICEVCGKCFRVRQVLREHKLSCFGPEANQPCYCVFCEQTFDTLSIALEHVKNSHETDILDKKCRYCDLIFREAEVLVEHEFRHSLPGIITCMVCNRIFKHHKNLMRHVKMHADQPVPYMCDLCGKTFTQKGSLTIHRRIHTGERPFSCQLCQKGFVDKKEMRRHYTSHFNPQSKLYIPNAHAIAMPPEAGPTGKKYKTYNCKICSRQFTSSSNLAKHVTTHTGEKKYVCEFCDKRFSQGGQLTVHRRIHTGERPFACENCGDRFLDGSSYKRHKTHHLCRTISSASDVPNGVEESSLSISFPESVPVTKSGKSQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -