Aepi007783.1
Basic Information
- Insect
- Anopheles epiroticus
- Gene Symbol
- -
- Assembly
- GCA_000349105.1
- Location
- KB671754:619436-621532[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 2.6 1.6e+02 2.5 5.4 2 23 235 257 234 257 0.92 2 14 0.00065 0.039 13.8 1.0 2 21 274 293 273 294 0.94 3 14 0.0034 0.21 11.5 1.9 3 20 301 318 299 321 0.92 4 14 0.14 8.6 6.5 0.8 1 23 327 350 327 350 0.93 5 14 0.0036 0.22 11.5 1.0 1 21 362 382 362 383 0.95 6 14 0.0042 0.26 11.3 0.9 1 23 387 410 387 410 0.96 7 14 0.016 0.96 9.5 0.2 3 23 422 443 420 443 0.91 8 14 0.0023 0.14 12.1 0.9 1 21 461 481 461 482 0.94 9 14 8e-06 0.00049 19.8 0.7 1 23 489 511 489 511 0.98 10 14 4.1e-05 0.0025 17.6 2.7 1 23 517 539 517 539 0.98 11 14 1.3e-06 8.2e-05 22.3 0.3 2 23 547 568 546 568 0.96 12 14 5.6e-05 0.0034 17.2 1.4 1 23 574 596 574 596 0.98 13 14 1.3e-07 7.7e-06 25.5 1.2 1 23 602 624 602 624 0.98 14 14 7.5e-06 0.00046 19.9 1.8 1 23 633 656 633 656 0.98
Sequence Information
- Coding Sequence
- ATGGACATCCTGATCGAGCCGGACTGCTACAAGGTGTGCCGGATTTGCATGGAAAGCTGCGAGGATGACTGCGTGTGCGTTTACGACGAGTTCGAGGACGTGCTGCTGAGCGACGTGATACGGGAGTGCGCCCGGGTCGAGATCCGCAAGAACGATGCGCTACCACGGAACGCGTGCCGCAACTGTGCCGAGTATCTGATCATTGCTTACCACATCATACAGAAGTGTCGCGAGTCGGATGTAACGCTTCGGTCCATCTTTAAGCACGAGCTAAACATGCATCGGGAAGAACGAAAACCCGACGCACCGTCGGTTGCGGACGATATGGACCCGTCGGGCTATGACTTTCTGCTAGCAAACGGTTATGACACCATGATGCTGGAAGGAGAAGGTATGCTGCTGGAGAACGCGGAATGTGATTTCGAATCCCCGGCCGAACAGAAGTCGGCGAATGTAGAGGAAGCGTTTGACCAGCAGCTACTGCCCGCGCTGGAACAGCAAACATCGCAGCAGGCATATCATCAAAGCCCGGAACAGCCGGAAATGAGAAACAACGAGGTAATGAAACCAGTTCTATCAAATGAGGATGTCGAGCTGATTCTGGAGTACGAAGAGAAGGCACTTGCACGTGCTGTGACCGACAATACGGTTCACGAATCGAGTGAAACTACCGAAGAGGACGGGTCATTCGGCAGTCAGAAGAAGTGTTGCGGTTGCAGGAAGCTGTTCGACAGCGAGCAAAGCTTACGTGAACACTGCCAAACCGTCCATCTACCGGTGGAATCGTTCTCACTAAACAGTAACGAAGAAAAGGCAATGCGCTGTTCGGTGTGTTTCAAGCGCTTTAGCTCGCGCCAGCTGCTCAAAGAGCACGAACGCTCCGTCAATCGGAAGTATGGCTGTACGCAATGCGGCAAGCGGTTCATGACGCAAGCCAACCTGGACGTTCACAGCAAATGCCACAAGGACAAGGAAACGTACAAATGTTGTGGCTGCCGGATGGACTTTGAGCAGGAGCTAGATCTGCTTGTTCATTCGCAAAACGTGCACCGTCCGGAGCGTACGGTGGATGCGCAGAAACCGTTCGAATGTGACACGTGCTATCGGCGTTATCCGACGCGCAAATCGCTCGCTACGCATAAGCGGCAGATTCGACAGTTTCAGTGTCCGCTGTGCGGTGCCATGTTTATGAAGCAACTGTTTCTGAAGCTGCACCACGAGCGGGCACACCAGCAGGAGGCACAGGGAGCGAGACGACGGTGCTGTGGCGGTTGTCGGGAGGTGTTTGAAGATGCGGCCGCTCTACGGGAACACTCCGAACGGGTGCACAAACCGACGGCCGACGGATCTGCTGGCTCGGGGACGGATGATGGGAAACCGTTTGAGTGTAACATCTGCCGAAAGCGGTTCGCCTCAATATTCTTCCTGCTGCAGCACCAGCAGAAGGTTGCACGGGAAAAGTGCTACCCGTGCACCGTCTGTGGCCGTACGTTTGGGCGTGCCCATGACCTTTCCAATCACGAGACAACCCACTCGAACGATATGCCATTTGAGTGTAGCGTTTGCAGCAGAAGGTTTAAAAACAAACTCTATCTCAAGAACCACCTCAAGCTTCACACGAGCATTGCGAAGGAGCAGGTTTGTGTCGAGTGTGGGAAAGCATTCCGCACAAAGGACCTGCTTAAAACGCACCTAATCAGCCACTCGCAGGAACGCAAGTACGCCTGCACGGTCTGCCCGGCAACGTTCAAACGGTTGCAGTGTTTAAAAATTCATACACGTGTTCATACGCGCGAGAAAGCGTTCGAATGTGCCGTCTGCCGCAAGCGGTACGTTCAATCGTCCGACCTAAAACGACACATGCGTACACACAACCCTGGCGACGAAGGTAAACCGTTCCAGTGTGAGTACTGCCTGAGACGCTATCCCCGCAAGGACTATCTAAAAGTGCACATACGCAAGCAGCATCTGGAAAAGACCGCCGAGCACGGACAGGAGGGTATGCTCGTGCAGGACGGTATCGGTCATGAGGATGGGATTTTAACATTCGAACGTAACGATCCACCGAATGGGATGGGCGATTTTATGGACTGTTGA
- Protein Sequence
- MDILIEPDCYKVCRICMESCEDDCVCVYDEFEDVLLSDVIRECARVEIRKNDALPRNACRNCAEYLIIAYHIIQKCRESDVTLRSIFKHELNMHREERKPDAPSVADDMDPSGYDFLLANGYDTMMLEGEGMLLENAECDFESPAEQKSANVEEAFDQQLLPALEQQTSQQAYHQSPEQPEMRNNEVMKPVLSNEDVELILEYEEKALARAVTDNTVHESSETTEEDGSFGSQKKCCGCRKLFDSEQSLREHCQTVHLPVESFSLNSNEEKAMRCSVCFKRFSSRQLLKEHERSVNRKYGCTQCGKRFMTQANLDVHSKCHKDKETYKCCGCRMDFEQELDLLVHSQNVHRPERTVDAQKPFECDTCYRRYPTRKSLATHKRQIRQFQCPLCGAMFMKQLFLKLHHERAHQQEAQGARRRCCGGCREVFEDAAALREHSERVHKPTADGSAGSGTDDGKPFECNICRKRFASIFFLLQHQQKVAREKCYPCTVCGRTFGRAHDLSNHETTHSNDMPFECSVCSRRFKNKLYLKNHLKLHTSIAKEQVCVECGKAFRTKDLLKTHLISHSQERKYACTVCPATFKRLQCLKIHTRVHTREKAFECAVCRKRYVQSSDLKRHMRTHNPGDEGKPFQCEYCLRRYPRKDYLKVHIRKQHLEKTAEHGQEGMLVQDGIGHEDGILTFERNDPPNGMGDFMDC
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00095209;
- 90% Identity
- -
- 80% Identity
- -