Basic Information

Transcription Factor Domain

TF Family: zf-BED
Domain: zf-BED domain
PFAM: PF02892
TF Group: Zinc-Coordinating Group
Description: The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 7 0.047 50 3.4 5.5 21 41 129 143 117 145 0.74

2 7 1.1e-05 0.012 15.0 0.2 13 43 146 173 143 174 0.91

3 7 0.0033 3.5 7.1 0.1 18 43 180 202 177 203 0.91

4 7 0.056 59 3.2 3.2 16 43 207 231 204 232 0.86

5 7 0.0012 1.3 8.5 2.2 4 29 224 249 221 257 0.86

6 7 0.0042 4.5 6.8 0.6 18 36 266 286 254 287 0.79

7 7 0.0061 6.5 6.3 0.8 19 43 294 315 291 316 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	7	0.047	50	3.4	5.5	21	41	129	143	117	145	0.74
2	7	1.1e-05	0.012	15.0	0.2	13	43	146	173	143	174	0.91
3	7	0.0033	3.5	7.1	0.1	18	43	180	202	177	203	0.91
4	7	0.056	59	3.2	3.2	16	43	207	231	204	232	0.86
5	7	0.0012	1.3	8.5	2.2	4	29	224	249	221	257	0.86
6	7	0.0042	4.5	6.8	0.6	18	36	266	286	254	287	0.79
7	7	0.0061	6.5	6.3	0.8	19	43	294	315	291	316	0.92

Coding Sequence: GAGGCGACTGCACAACTTTCTCCAGAAGACGTTCCACATGCGAATGATGTTGGCTTTGAGCCCAAGCCGGAAATAGACCCAGACGAAATCTTTCTTTTCGATGATACAGTTTCTGTTTATACCATTACTGAGCTCCAGCAACAGGCAGTTGGGGACGATAATCACTTCAAATATGATAATGATTACGTCTCTATGGACGACATTGAACCAGAAGCAACACCATCGAAACGAGCGTGTTCATTGAAAGGCATATGTAAACAGATCTCACCTACAGAAACGATAGTTACGGAAGAAACTAAAGAAGTGAACGCTGCTGAAGGTGCCAAAGCACTTGAAAACATAAACCCGGAAAACTGGCGACACTTTGGCAAACGAATGTGTGAAATTTGTGGTCAATCGGTTACCTGTTTGACACGACATCTTCGGAGCCACGCCAAGGAAGGTAAGTACGGCTGTCCGTACTGTACCGTCCAAATGTCGGACAGCTCCAACCTCTTGCGTCATATTCGATCGGTACATCTGAAAATTGTCGTCAAGACGTGCGAATTGTGTGGTAAAGGATTTGTACAATACAACACCTTCAACGATCATATGCGATCCAAGCACGGTATTGGAGAAAAGTACGAATGTAAAATATGCTTCAAAAAATATCTTCACCCGGCTGGGTTGAAGCAACATCAACAGCGCGCGCACACTGACATAAGGAAAAACGAATGCGAGCTTTGCCACAAACGGTTCAAGAGCAAACGCGAACTGCGGGGTCATGCGCGAGTACATTCCGAAGAAAGACCATTCGCATGTAACCACTGCACAAAACGGTTCAAAAGTAGATTCGCGCGCGATACGCATCAACTAACGCACTCAGGCATCACATTTCCATGTCAACTCTGCAACAAGTCTTATCGGTACAAGTCTCAGCTCAACGTGCATATCCGGAAGTTTCATACGGAATCGAGTCAAGACAATGATGACGAATCTAGTACCGGATTAGATGACCTTAGCTCCATTCCAGACAACCTGTTAGCCGAGTAG
Protein Sequence: EATAQLSPEDVPHANDVGFEPKPEIDPDEIFLFDDTVSVYTITELQQQAVGDDNHFKYDNDYVSMDDIEPEATPSKRACSLKGICKQISPTETIVTEETKEVNAAEGAKALENINPENWRHFGKRMCEICGQSVTCLTRHLRSHAKEGKYGCPYCTVQMSDSSNLLRHIRSVHLKIVVKTCELCGKGFVQYNTFNDHMRSKHGIGEKYECKICFKKYLHPAGLKQHQQRAHTDIRKNECELCHKRFKSKRELRGHARVHSEERPFACNHCTKRFKSRFARDTHQLTHSGITFPCQLCNKSYRYKSQLNVHIRKFHTESSQDNDDESSTGLDDLSSIPDNLLAE

Sequence clustering based on sequence similarity using MMseqs2