Basic Information

Gene Symbol
Rreb1
Assembly
GCA_000211455.3
Location
scaffold:5805-14000[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 11 0.018 1.1 9.1 3.1 2 23 266 287 266 288 0.96
2 11 0.00019 0.012 15.3 0.1 1 23 318 340 318 340 0.97
3 11 0.0016 0.095 12.5 7.8 1 23 346 368 346 368 0.98
4 11 0.06 3.6 7.5 4.9 2 21 626 645 626 646 0.94
5 11 7 4.2e+02 1.0 0.4 1 19 691 709 691 711 0.86
6 11 0.0097 0.57 10.0 0.1 1 23 970 992 970 992 0.97
7 11 4.8e-06 0.00029 20.4 0.3 1 23 1001 1023 1001 1023 0.99
8 11 0.0015 0.09 12.5 2.3 1 23 1029 1052 1029 1052 0.97
9 11 0.00088 0.052 13.3 2.1 1 23 1699 1722 1699 1722 0.95
10 11 8e-05 0.0047 16.6 0.3 2 23 2205 2226 2204 2226 0.97
11 11 0.41 24 4.9 5.4 1 23 2232 2255 2232 2255 0.96

Sequence Information

Coding Sequence
ATGGATGCTGGCAGTCGGTTACCACCAGTAGCAACAGAGGTGGAGGAGGGTTCGGATACAAACACCACCACCACCACGATCAAGACGGAAGTGATGGAGACGACGGCGGCGGCGGTGACAGTGGAGCCCGCGGAACAGCAGCAGAAGCAGCACATCGATCAGCATCATCACACCGTTGGCGTGGAGGAGGATGAGGGTGGTGGTGCGGCAGCGGCGTCGGCGGCTGCGGCCACGGAACACAAGAGACGTTCATCCGCCGATCCAGCTACTGCTGGCGAAGGACGCGCGaacatcgatcgccgcggtagcagcggtagcaacagtagcggcgccagtagcagtagcagtagcaataaccatagcaacagcaacagcaacaacaacaacgccagcagcagcagcagtaagaagcagcgcagcgataagctgcatcagtttacggatatgctgctcgaacgtaacctaagtagcagctcgtcaacggcagccacctatcacgctaataccaatgatagcaacaacaacaacaacgggcgcagcagtagtagcGGTGTGCGCGGTGGTGGAAAGCGATCGCTCGACATGACTACCTCCATGCTGATGCAGCAGCAGCGTCAGGCTCAGCTTGTCGATCAACAGCAGAGCAATAACAATATCCACCAGCACCACCATGTTGGTAGAGATGGTGATGCCAGTGAGCAGCAGCAGCAACCAACACTACCGCCACCGGCGGCACCACTTGCCGATGAGGCTGATCACCAGCAGCAGCATCCCGCCCAAAGCCAATGGCGGCGCAAGTGCCCGATTTgccacgagctgttaccgagcagccacgatctgaccgagcaCGTGCGTTCGCATCACGCCGCGGAAcagcagctgcagcagcagcaacagcagGCCTCTGCGGGACGGGAGTCAGGGTCGCAGGGTGCACCAGGGGCCGGTACCTTTATCTGCAAAATTTGCTCCAAGGTGCTGTCATCCGCTTCGTCGCTCGATCGCCACGTCCTGGTGCACACCGGCGAGCGCCCGTTCCACTGTAAGCACTGTGCGCTCACCTTCACCACGAACGGGAACATGCATCGGCATATGCGCCTGCACAAGAACTCGCCGGGGCGCGACAGTGTGGAGAGTAGCAGCGATGGTGGTGTTGCCGGTGGTGCCGGTACTGCTGCTGCCGAAGGTGTACTGGTGCCGTCCTCCGATGGTATTACCACCACCGGTGGTAAGGTTCGCCGACGGAAGCGTGCCGaaccgcagcaacaacaggagcagcagcagcagcagcagcagcagttggtggccgtggcagccacagcagcaacgcaccaccacCGGTCCCGATTCACGATCGAGCACGAGGAGGAACACGAAGCGAAGGTAGAAAAGCAATTAAAGGCGGAGATGGAGCCgcagcagcagcagcagcaATTGGAGAGCGGTGATGACGAAGAGGAGGATCAACAGCCGCCAGGATGCGGTGGTGGTGGTGAACGTCGTCGTCGTCGCCATCGCCGCCGTCGGCACATTCTCCATTGTGAGGACGAAAAGCAGGAGCCAAAAACCGAGGGGCAACATGAGGAAGAGGAGGAGCAAGAAGAAGAAGGTGAGCTCGAGGATGGCGACGACGAGCTGGTGGTGGGTGGGAAGCGAAGGGCAACACCATCGGTGGTTGGCGGTGCTGCTGCTAAACACCATCGCAAGGTGCGCACGATCAACAACAACCTGCTGGAGGGTTCGGTGGTCGAGAGTGGCGACGGTGGCGGTGATGGTGGTCAGCGCTTCTGCTGTCCCGTGTGCGTGCGCAACGACTTCGGCAGCATGCTGATGCTGGAGAACCACCTGGACCGGGAGCATCCGTCGATACCGGCCAAGTGCCGCCACTGCGAGACGGTGTTCCGCAGCCACAAGGCGCTGAATGCGCACCGGTGCAGCAACAACAACTACCAGAACATTACACCCGGCTTCAAGGATCTTACCTTCGTCGACTTCTCGAGCGAAAAGTTTCCGCTGATTGCGAAAAATCTGTGCGAACAGAGCATCCGGACGCCGGTGACGAGCCAGAAGTACGAGTGCGGTCGCTGCTACCGTGCCTTCCCGTGCTCGCAAACGCTGACGATGCACGCGGCCGAGTGTGGCGTCGGTGGGGGCAAGAAGCGTAAGCGCGCCCCGAGCGACTCGGATACGTCCGATGTGCCATCCGAGGCCGCCtcttcctcggacagcagtggacgggacgatccatcgcaccatcagcaatggcagcaacagcagcagcagcaccagcagcaacagcaacagcaacagctgcttttgcatcatcatcatcagcagcagcagcagcgtcgtgaggatttctttgccAATCTGGATCTGCAGAACCGCTCGATGGGTGGACTGTCGGAGGCACCAACCACACCATCCTCGCTCGATAAGTCGTTCTCCTCGCCGCTGGTGAAGCTAGAACCGCTTGATTCACCTACCGGCGGCGGTGCATCGACGATGCCGCTGTACTATCACCACCACTCGAGCCCAGTGGCCGGTACGGCTCTGTTCCAGCATCACCATCTTAGTGGTGGTAGTagcagcagtctgctgcacagtcagcagcagcagcagcagcTTCATCAGGATGGTGGCAAGGATCTGGCCGACATACAGAGCATTATCAATGTCGCTTCGTCGGGCGGGTTGTTCGGGAGGCAGCAGCTGGACGGTGTGGGAGATAGCAGCCGCCACACGCCCCTATCGGGGCTCGGGCTGTCGGGTGAAGGCAGCGGCAAGGACTGTGGCGGTAGCGGTAGCAGCGTGTACGCCCATTCGACCGGTTCGCGCGGCGATGACGGTGAGGAGGCACAGGATGCGTTTACGGCCGAGTTCAGGCGCATGAAGCTGCGGGGCCAGTTCCCGTGCCGGATCTGTACGGCCGTGTTCCCCAACCTGAGGGCGCTCAAGGGCCACAACCGGTCGCACGTGACGGCGGCCGGCCCGGGACCGTACCAGTGCAACATGTGCCCGTACGTCATCAACGATAAGGCCACGCTGATCCGTCATATGCGCACCCATAACGGGGATCGGCCGTACGAGTGTGCCCTGTGCAATTACGCCTTCACGACGAAGGCCAACTGCGAGCGGCATCTGCGGAACCGGCACGGGCGGACGACGCGCGACGACGTGAAGCGGGCCATCATCTACCACCCATCGGAGGATTCGTCGTGTGAGGATCCGCTGAAGAAGCTGCATCTGTTCAATACGCCGCCCGCCGACTATGAGCCGTCGATGGGTGCTGCTACCGCTcagcagcgccatcatcatcaccatcatcatggtctgctcactggctatgatgagcagcagcagcagcagcagcagcagcaacagcgcagcagtaCACCGCTATCATCGACGTCGTCGCACCTGAAGGATATGCTGGTGCCACCGGTGCTACCGTTGGGGGGCTACGTTGCTGGCGCCGGCCCCACTACCAACCCACTCCTCGACACCAGCCTGCTGCTGCAGACACCTCCTAGCGGTGGTGGTGGTGATGGTAACAATGCTGCCGCGGCTTTTGGAGCAGCCGCGGCCGTCGCGGCAAAGATTCAGGTGAAGAGCCTGGAGAAGCTGAACCAGCTGACGCCACCGCAGGAGGAGGAGCTGCTAGAGGAGAGCTACGAACCGCTCCTTGATTCGGCCACGGTGCTACACCAGCATCTCGTTGGTTCGACGAAGAGCGGCGTGCAGACACCACCGGCACTGCTAcaccgtaagcagcagcagcagcagcagccgacgacgacgacaacagtagcagcatcagcGGTGGCGTTGCCGACTCAGCGTCCCATCGATCTGAGCATGGATGCACTTGATTTGAGCAAGAAACCGTCCAGCAAGCTGGCTACCGCCGCCGCTACCACCGATGAAGACGATGACAACGAGGACGACGAATGTGGTGACGATGAGGAGGTGGACGATGAGCACGACGAACACTACGAGAAGGGACCGGCTGATGGTCGGCTTAACGGGGATCGAAAGTGTAATGGGGAAGGCACCGCCTCCGGGGTCGTCGGTTCTAACGCTGAACGGCGGCACCGTCGCCGTCGCCGCATTGGAACGGATTTAGAGGAGATAGAGAACGAGGACATCATcgaggaggacgaagaggaacacgttgaggaggaagaggaagagtacgacgacgaggaggaggTTGGTACGGTGGTGGAAGGCAAGCAGAGATCGGGAGCTGCTGCTGCTGTTGCGGCTGCTGACTTTATCAAGCACACAAagctgtcgcaaccgcagcaacagcaccaccatcaccatcaacagcttcagcaacagcaacaaacgcagttgcagcagcaacaacagcaactgcTGATGAGCGAGGCCTTCTCGAAGTTCGACTTTTTGCAGCTGTATCAGCTCTGCACCCAGCTCAACTCGCTGCAGCTACCGTCATTCCCGTCACCGCTGCACACGGCCGCAGCTCCTTTCCTTCAGAATCCGATGCTGGCGGCTGCAGCCGCTGGACCACTGGGCGATCTGTTCGGGAAGGACTTTGGTCTCGGTGCGCTGCCAAATCTAGCGGCTGCGGCGGCTGCTGCAGCAGCGGCCGCTGCCGCCTCTACCGGTCGCACTGGTGCACACTCTTCGCGTGGCGGTACTCCCAATGCCAACCCCTACTCCTCACTGCTATCCATGAGCAACCCCTTTCACTCGGCGGCCGAAGCTGCTTCGGTGAAGGCAGCCGCGGCTGGTGGTGCGTCCTCGACGCCACCCAATCTGATCGTTCCACCAACCAGCtcctcctcatcatcatcaacgtcactgcagcaccgccagtcatcgccgatttcatcgttagcatcgcccggcaaaaccgccggcacacatcagcagcagcagcagcaacagcagcacaacattcgtcacatcatcatcatcatcatcatcatcaccatccgcaggcggcggcggctgcagcggccgcagcggcagcagctgctgctgccgccgctgccggctacggcgTCCCACCGTCGGCTGGCTCTGCCGAAACAGCGGCGCTACCGTACCGAACGGCCGTTTGCCTGTGAGCACTGCTCGGCTCGCTTCACGCTTCGCTCGAACATGGAGCGCCACATCAAGCAGCAGCATCCGCAGTTCTGGTCACAGCGGCAGCGTGGTGGTGGCCATCATCTGATGCGTCGTGGCAGTGGGGGAGCCTCTGGTGCTGCTGCTgcagcagcagcagcagcagcGGCGGCCGCCGCCGCTGGCTCACTAGCAGCCGCCCTGCAAGGTGGCGTATTCGGTGGGCCGGCGACAGCAGGAGGAGGAGGAGCATCCAGTGGTAGCGGCAGCAGCGGCAGCGCTGGTGCCATCTCGGAGCAAGTCAAGTACGCAATCTTGGCGCAGCAATCGGGCAAGGGAGGAGGTGCGCTCGGGCTGCATCCGCTACTCCAGAACATGATCACGCAGCAGCAGCAGCAGGGCGCTAGCAGCGGTCAGGGTGCCACGTCGGACGGAAGCACCTCGTCAGGCCATTGGAATGCCACGAATGGTGGAACGGTTGGCGGTGGTATCCTGCAACAGCAGCAGGAGCAGCAGGCGGCGGCGGCGGCCGCGGCTCAGCATCATCTTTCGCAGGCGGTGACACCGATGCACCATCACCGTTCCAGTCTGGCGGCGCTCGGTGACCGTCGCAGCTACCAGGACAAGACACCGGTCCTGCAGCAGCATCACAACCCCCACCACAACCATCACCGTCAGCATCGCCATCGTCGCCGTTGTCTGCAGCCCgagctcgatgagctcgatgagGAGCTgcagcagcaccaccaccaccagcagcagcagcaaccactggagcacGATCGCCATGACAGTGCCGCCGTTTCACCTTTTCCACTAGTTGACCGATCGAAGCACACAACACAAGCAGTCGACGATCGACGGGAGCAGGACGACGAGGCAGAGGATGATTCCACACAGCAGCTCGTCATCGATgaggaagaggaggtggaagagcaagaggaagaagaggaggaagaggagggtggaggTGCCGAGTCGAAATCCGACTCCTCGGACCAAGGCGTGCACCACCACCAGCGAGCCAAAAACAACGGCAACAGCTTTGGTAGCAGCGAACACAATGGCGGTGGCGGCGGCGGCACTGCCAGTGCTGTTcagcagcagcagcagcagcgcacgaaccaccaacagcaacaacagcagGTTGCTGCTCAAGCCGTGGCCAAAGATATCCTCGAGCAGGCGAAGCAACAACAACAACAGGAGCAGAAACAATCACCACATCAAACCAGCACTATCGATGAGGCCATCAGCAACAGTGACCTGGTGCCGGTTGCCAAACTGCTCGATAATGCCGCCACCCACAACAATGCGGCGCTGGAAAGTTACTTCAGACCGGAAGTGGTGCCACTGGCACACGATCACAGCGACGAGGAGGGCCTGGTGGCGTCCGGGTCCGCGTCCGAGAGTAACAATTCCGGCACGGACGATCCCTACCCGTCGGCGGTGGCGCTGCTGCAGCAACAGAAGAAGAAATCGGCCTACAGCCTGGCACCGAACCGGGTCAGCTGCCCGTACTGTCAGCGCATGTTCCCGTGGTCGAGTTCGCTGCGGCGTCACATCCTCACGCACACCGGCCAGAAACCGTTCAAGTGCTCCCAGTGCACGCTGCTGTTCACCACCAAGTCGAACTGCGATCGGCATCTGCTGCGCAAGCACGGTGACGTCGAGTCGGCCGTTTCGATACCGGTGCCGATTGACGATCTGCTCGACCCGAAACCGGAACCGATCCCGGTCGCCGTAGCCGAGGCGATGAACAAACGGTCCGGTAGCAACAGCAAGGCAAAGGCCGCTTCAGGCTCCTCCTCATCGGCGAGTACTACTACCACCGGGGGACCGGCAGCAGGGCCAACGATGGTGCCCAACGAGGCAGAACCCCTGGACGGTCTATCGGCAGTAGCCCTGGCCGAACAGAGCCGAGATGAAGAGGACAACGAAGAGGAGGACGATACGGTTGGCCATGAAGCGTTGGAGGGAGGAGCCGCCAACAAGTCTGCTCCGGTAACCACCAACGGTAGTGCCTCGAGTGATGCTGAATCGAAAGGTCACGATGGTCTCAACCTCCGTGGTAACgaggatgacgaggaagatgaagagagggaggaggaggaggagcagcagcagcaggaagaagggcagaTCCATGACGATCATGAGGGCGGCGAAGATGATGAGATGGAGGAAGAGGAAGCAGCCGTTGGTGCCGGTGCCGGTGGCGGTCTGGCGGATCTACCCTTCAAATGTCATCTGTGTGACTGCTCGACAGCGAACCGGGTCGCCTGTCTCGATCACATGCGCCAGTGTCATCCACAGGACTTCGAAGCGCTTCGGTCGAAGGTGGCACTGGACGCGGTGGTAGCTGCTGCTGCTGCTGGCggcagtggcagtggcagtggcagtggcggtgacagtgACGGCGGCCAAACAGCAACCACCAACTCGCCCGATGATGACGAGAGCGGCAACAATGATACCACCTCGGCCACGTGCACGACGGCAGCCAGTCCCAGGCTTCTtaacaacaacaacaataataataacaataatctcaacaacaacaacaacaacaacaacaacGGTGGCAAGTATCCCGACTATGCCAACAGGAAGGTAGGTCTAAGGTTATCTGCGCCTTCTGTATGCGTCGCTTCTGGTCGGCGGAAGACCTGA
Protein Sequence
MDAGSRLPPVATEVEEGSDTNTTTTTIKTEVMETTAAAVTVEPAEQQQKQHIDQHHHTVGVEEDEGGGAAAASAAAATEHKRRSSADPATAGEGRANIDRRGSSGSNSSGASSSSSSNNHSNSNSNNNNASSSSSKKQRSDKLHQFTDMLLERNLSSSSSTAATYHANTNDSNNNNNGRSSSSGVRGGGKRSLDMTTSMLMQQQRQAQLVDQQQSNNNIHQHHHVGRDGDASEQQQQPTLPPPAAPLADEADHQQQHPAQSQWRRKCPICHELLPSSHDLTEHVRSHHAAEQQLQQQQQQASAGRESGSQGAPGAGTFICKICSKVLSSASSLDRHVLVHTGERPFHCKHCALTFTTNGNMHRHMRLHKNSPGRDSVESSSDGGVAGGAGTAAAEGVLVPSSDGITTTGGKVRRRKRAEPQQQQEQQQQQQQQLVAVAATAATHHHRSRFTIEHEEEHEAKVEKQLKAEMEPQQQQQQLESGDDEEEDQQPPGCGGGGERRRRRHRRRRHILHCEDEKQEPKTEGQHEEEEEQEEEGELEDGDDELVVGGKRRATPSVVGGAAAKHHRKVRTINNNLLEGSVVESGDGGGDGGQRFCCPVCVRNDFGSMLMLENHLDREHPSIPAKCRHCETVFRSHKALNAHRCSNNNYQNITPGFKDLTFVDFSSEKFPLIAKNLCEQSIRTPVTSQKYECGRCYRAFPCSQTLTMHAAECGVGGGKKRKRAPSDSDTSDVPSEAASSSDSSGRDDPSHHQQWQQQQQQHQQQQQQQQLLLHHHHQQQQQRREDFFANLDLQNRSMGGLSEAPTTPSSLDKSFSSPLVKLEPLDSPTGGGASTMPLYYHHHSSPVAGTALFQHHHLSGGSSSSLLHSQQQQQQLHQDGGKDLADIQSIINVASSGGLFGRQQLDGVGDSSRHTPLSGLGLSGEGSGKDCGGSGSSVYAHSTGSRGDDGEEAQDAFTAEFRRMKLRGQFPCRICTAVFPNLRALKGHNRSHVTAAGPGPYQCNMCPYVINDKATLIRHMRTHNGDRPYECALCNYAFTTKANCERHLRNRHGRTTRDDVKRAIIYHPSEDSSCEDPLKKLHLFNTPPADYEPSMGAATAQQRHHHHHHHGLLTGYDEQQQQQQQQQQRSSTPLSSTSSHLKDMLVPPVLPLGGYVAGAGPTTNPLLDTSLLLQTPPSGGGGDGNNAAAAFGAAAAVAAKIQVKSLEKLNQLTPPQEEELLEESYEPLLDSATVLHQHLVGSTKSGVQTPPALLHRKQQQQQQPTTTTTVAASAVALPTQRPIDLSMDALDLSKKPSSKLATAAATTDEDDDNEDDECGDDEEVDDEHDEHYEKGPADGRLNGDRKCNGEGTASGVVGSNAERRHRRRRRIGTDLEEIENEDIIEEDEEEHVEEEEEEYDDEEEVGTVVEGKQRSGAAAAVAAADFIKHTKLSQPQQQHHHHHQQLQQQQQTQLQQQQQQLLMSEAFSKFDFLQLYQLCTQLNSLQLPSFPSPLHTAAAPFLQNPMLAAAAAGPLGDLFGKDFGLGALPNLAAAAAAAAAAAAASTGRTGAHSSRGGTPNANPYSSLLSMSNPFHSAAEAASVKAAAAGGASSTPPNLIVPPTSSSSSSSTSLQHRQSSPISSLASPGKTAGTHQQQQQQQQHNIRHIIIIIIIITIRRRRRLQRPQRQQLLLPPLPATASHRRLALPKQRRYRTERPFACEHCSARFTLRSNMERHIKQQHPQFWSQRQRGGGHHLMRRGSGGASGAAAAAAAAAAAAAAAGSLAAALQGGVFGGPATAGGGGASSGSGSSGSAGAISEQVKYAILAQQSGKGGGALGLHPLLQNMITQQQQQGASSGQGATSDGSTSSGHWNATNGGTVGGGILQQQQEQQAAAAAAAQHHLSQAVTPMHHHRSSLAALGDRRSYQDKTPVLQQHHNPHHNHHRQHRHRRRCLQPELDELDEELQQHHHHQQQQQPLEHDRHDSAAVSPFPLVDRSKHTTQAVDDRREQDDEAEDDSTQQLVIDEEEEVEEQEEEEEEEEGGGAESKSDSSDQGVHHHQRAKNNGNSFGSSEHNGGGGGGTASAVQQQQQQRTNHQQQQQQVAAQAVAKDILEQAKQQQQQEQKQSPHQTSTIDEAISNSDLVPVAKLLDNAATHNNAALESYFRPEVVPLAHDHSDEEGLVASGSASESNNSGTDDPYPSAVALLQQQKKKSAYSLAPNRVSCPYCQRMFPWSSSLRRHILTHTGQKPFKCSQCTLLFTTKSNCDRHLLRKHGDVESAVSIPVPIDDLLDPKPEPIPVAVAEAMNKRSGSNSKAKAASGSSSSASTTTTGGPAAGPTMVPNEAEPLDGLSAVALAEQSRDEEDNEEEDDTVGHEALEGGAANKSAPVTTNGSASSDAESKGHDGLNLRGNEDDEEDEEREEEEEQQQQEEGQIHDDHEGGEDDEMEEEEAAVGAGAGGGLADLPFKCHLCDCSTANRVACLDHMRQCHPQDFEALRSKVALDAVVAAAAAGGSGSGSGSGGDSDGGQTATTNSPDDDESGNNDTTSATCTTAASPRLLNNNNNNNNNNLNNNNNNNNNGGKYPDYANRKVGLRLSAPSVCVASGRRKT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-